Results 101 - 107 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 226091 | 0.72 | 0.737834 |
Target: 5'- --cGGCCCGUCAcGCCCaacagauaccACgGCGUGCa -3' miRNA: 3'- ucaUCGGGUAGUaCGGG----------UGgUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 166271 | 0.74 | 0.658391 |
Target: 5'- ---cGCCC-UCAgacauacuUGUCCACCACGUACg -3' miRNA: 3'- ucauCGGGuAGU--------ACGGGUGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 109763 | 0.74 | 0.648279 |
Target: 5'- -cUGGCCCAgcugcugCAUGCCCACUugGggaugGCu -3' miRNA: 3'- ucAUCGGGUa------GUACGGGUGGugCa----UG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 35452 | 0.75 | 0.57757 |
Target: 5'- -aUAGUCCAUCAUGCCgCGCagguCGUGCa -3' miRNA: 3'- ucAUCGGGUAGUACGG-GUGgu--GCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 127853 | 0.77 | 0.50772 |
Target: 5'- --cAGCCCGUCGggcagguUGCCCACCaggaugcgcgGCGUGCa -3' miRNA: 3'- ucaUCGGGUAGU-------ACGGGUGG----------UGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 88597 | 0.77 | 0.489611 |
Target: 5'- --gAGCCCAU--UGCCCacaGCCACGUGCg -3' miRNA: 3'- ucaUCGGGUAguACGGG---UGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 222544 | 0.96 | 0.03868 |
Target: 5'- aGGUAGUagCCAUCAUGCCCACCACGUACc -3' miRNA: 3'- -UCAUCG--GGUAGUACGGGUGGUGCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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