miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 5' -54.7 NC_003521.1 + 130956 0.68 0.93538
Target:  5'- uGGUGGCCCcgCcgccGCCCGUCACGUc- -3'
miRNA:   3'- -UCAUCGGGuaGua--CGGGUGGUGCAug -5'
14615 5' -54.7 NC_003521.1 + 132715 0.67 0.948959
Target:  5'- cGUAGCCCc-CAUGCCCAagucCCcaaGCGcUACa -3'
miRNA:   3'- uCAUCGGGuaGUACGGGU----GG---UGC-AUG- -5'
14615 5' -54.7 NC_003521.1 + 134371 0.71 0.811507
Target:  5'- aAGUcGCUCAaCAUGCgCUACUGCGUGCg -3'
miRNA:   3'- -UCAuCGGGUaGUACG-GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 136694 0.7 0.860328
Target:  5'- --cAGCuCCAUCGUGUCC-CCACG-GCg -3'
miRNA:   3'- ucaUCG-GGUAGUACGGGuGGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 136793 0.67 0.944663
Target:  5'- --gGGCUCAcggUCAcgcUGCCCGCCgacgaccccgGCGUGCg -3'
miRNA:   3'- ucaUCGGGU---AGU---ACGGGUGG----------UGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 138047 0.68 0.921917
Target:  5'- --cGGCgCCGUCAUcgcgcagccgcugccGCuCUACCGCGUGCa -3'
miRNA:   3'- ucaUCG-GGUAGUA---------------CG-GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 138805 0.7 0.860328
Target:  5'- cGUGGCCCAg-GUGCUCaACCACGc-- -3'
miRNA:   3'- uCAUCGGGUagUACGGG-UGGUGCaug -5'
14615 5' -54.7 NC_003521.1 + 139523 0.68 0.919705
Target:  5'- cGUAGCCgAugcUgAUGCCgAUCAUGUGCu -3'
miRNA:   3'- uCAUCGGgU---AgUACGGgUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 142339 0.66 0.970091
Target:  5'- --cAGCCC-UCGuUGCCCACgACG-ACc -3'
miRNA:   3'- ucaUCGGGuAGU-ACGGGUGgUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 142571 0.66 0.972882
Target:  5'- --aGGCUCGcCGUGCCCGCCGUGgcCg -3'
miRNA:   3'- ucaUCGGGUaGUACGGGUGGUGCauG- -5'
14615 5' -54.7 NC_003521.1 + 146623 0.7 0.867797
Target:  5'- --gAGCCCGUCGUcgucuucaaggGCCCcgGCCACG-ACg -3'
miRNA:   3'- ucaUCGGGUAGUA-----------CGGG--UGGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 148296 0.71 0.810639
Target:  5'- gGGUAGCCCAggUCGggaaaguUGCUcagCACCAgGUGCa -3'
miRNA:   3'- -UCAUCGGGU--AGU-------ACGG---GUGGUgCAUG- -5'
14615 5' -54.7 NC_003521.1 + 149263 0.67 0.960495
Target:  5'- cGUGGCCaUGUCGUuccgcgucggcGCCCACaagUACGUGCu -3'
miRNA:   3'- uCAUCGG-GUAGUA-----------CGGGUG---GUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 149569 0.66 0.97548
Target:  5'- cGGUuuCCCGccCGUGCCCAuCUACGUGg -3'
miRNA:   3'- -UCAucGGGUa-GUACGGGU-GGUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 151804 0.7 0.844792
Target:  5'- aGGUGGCCgGcaCGUGuUCCACCACGUccGCg -3'
miRNA:   3'- -UCAUCGGgUa-GUAC-GGGUGGUGCA--UG- -5'
14615 5' -54.7 NC_003521.1 + 152743 0.66 0.967099
Target:  5'- gAGUGGCCCGUgGUcacgggcgccGCcgaCCACCGCG-ACc -3'
miRNA:   3'- -UCAUCGGGUAgUA----------CG---GGUGGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 153084 0.69 0.888938
Target:  5'- --gGGCCCGggcCGggGCCCACCACGc-- -3'
miRNA:   3'- ucaUCGGGUa--GUa-CGGGUGGUGCaug -5'
14615 5' -54.7 NC_003521.1 + 153454 0.66 0.967099
Target:  5'- cGUAGgCCAgcg-GCUCgcagGCCACGUACa -3'
miRNA:   3'- uCAUCgGGUaguaCGGG----UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 153738 0.71 0.828499
Target:  5'- ---uGCCCAcCGUgGCCCACCaauccACGUACa -3'
miRNA:   3'- ucauCGGGUaGUA-CGGGUGG-----UGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 156193 0.66 0.967099
Target:  5'- cGGUGGCgCGUCAggaaGCCUacgucgaagggACgACGUGCg -3'
miRNA:   3'- -UCAUCGgGUAGUa---CGGG-----------UGgUGCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.