miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 5' -54.7 NC_003521.1 + 163411 0.69 0.908087
Target:  5'- cGUGGcCCCGUCGucggcugccgcUGCCUACCAgGgUGCc -3'
miRNA:   3'- uCAUC-GGGUAGU-----------ACGGGUGGUgC-AUG- -5'
14615 5' -54.7 NC_003521.1 + 166271 0.74 0.658391
Target:  5'- ---cGCCC-UCAgacauacuUGUCCACCACGUACg -3'
miRNA:   3'- ucauCGGGuAGU--------ACGGGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 166359 0.68 0.924629
Target:  5'- --aAGCCCAggaCGUGCUCGCugaacacggugcgCACGUACu -3'
miRNA:   3'- ucaUCGGGUa--GUACGGGUG-------------GUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 169141 0.71 0.828499
Target:  5'- --cGGCCUAcggCGUGCUCACCAaGUGCg -3'
miRNA:   3'- ucaUCGGGUa--GUACGGGUGGUgCAUG- -5'
14615 5' -54.7 NC_003521.1 + 173255 0.68 0.93538
Target:  5'- -cUGGCCCG-CGggGCCCGCCGCcugACa -3'
miRNA:   3'- ucAUCGGGUaGUa-CGGGUGGUGca-UG- -5'
14615 5' -54.7 NC_003521.1 + 174737 0.67 0.956871
Target:  5'- gGGcGGCCCAacgCAggGCUCgcucggcuGCCACGUACg -3'
miRNA:   3'- -UCaUCGGGUa--GUa-CGGG--------UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 179436 0.66 0.967099
Target:  5'- uAGUGGUacuccaCCAaCGUGUCCACCagccgcuugACGUACu -3'
miRNA:   3'- -UCAUCG------GGUaGUACGGGUGG---------UGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 192484 0.67 0.960495
Target:  5'- cGGUcGGCUgAUCAccgUGUCCACgCugGUACu -3'
miRNA:   3'- -UCA-UCGGgUAGU---ACGGGUG-GugCAUG- -5'
14615 5' -54.7 NC_003521.1 + 197653 0.66 0.963903
Target:  5'- cGGUGGCgC-UCGUGCggcagcagcgCCACCagcGCGUGCa -3'
miRNA:   3'- -UCAUCGgGuAGUACG----------GGUGG---UGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 198098 0.71 0.823472
Target:  5'- cGGU-GCCCuuguacgcuuuggaaAUCGUGCCgGCCACGUugucGCg -3'
miRNA:   3'- -UCAuCGGG---------------UAGUACGGgUGGUGCA----UG- -5'
14615 5' -54.7 NC_003521.1 + 200949 0.69 0.888938
Target:  5'- ---cGCCCAccccaaCGUGCacaaccCCACCACGUGCa -3'
miRNA:   3'- ucauCGGGUa-----GUACG------GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 203366 0.69 0.901931
Target:  5'- cGGUGGCCCGcgcgCGaGCCCACaGCGUcACc -3'
miRNA:   3'- -UCAUCGGGUa---GUaCGGGUGgUGCA-UG- -5'
14615 5' -54.7 NC_003521.1 + 205778 0.68 0.914012
Target:  5'- uGGUGGCgCCGcacggcaugagCGUGCCCaACCGCGUcCg -3'
miRNA:   3'- -UCAUCG-GGUa----------GUACGGG-UGGUGCAuG- -5'
14615 5' -54.7 NC_003521.1 + 211383 0.69 0.901931
Target:  5'- uAGUAGgCCGUCAggcGCCgGCUcuCGUGCa -3'
miRNA:   3'- -UCAUCgGGUAGUa--CGGgUGGu-GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 211761 0.67 0.948959
Target:  5'- cGUAGCCCGagAUGUCCgGCCAgGg-- -3'
miRNA:   3'- uCAUCGGGUagUACGGG-UGGUgCaug -5'
14615 5' -54.7 NC_003521.1 + 212334 0.66 0.972882
Target:  5'- --gAGCCCgacgGUCAcGCCCAUCACcacccgcugGUGCa -3'
miRNA:   3'- ucaUCGGG----UAGUaCGGGUGGUG---------CAUG- -5'
14615 5' -54.7 NC_003521.1 + 212484 0.67 0.944663
Target:  5'- cGUGGCCCAcacgcaCAUGgCCgacgagACCACGUAg -3'
miRNA:   3'- uCAUCGGGUa-----GUACgGG------UGGUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 213569 0.66 0.967099
Target:  5'- cGUGGCCgCAUCAUcgGCgaGCC-CGUGCu -3'
miRNA:   3'- uCAUCGG-GUAGUA--CGggUGGuGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 214618 0.67 0.948959
Target:  5'- gGGUAGCCCA----GCCagACCAgCGUGCu -3'
miRNA:   3'- -UCAUCGGGUaguaCGGg-UGGU-GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 217503 0.71 0.810639
Target:  5'- aGGUGGCCUG-CAUGgCCAcggugcuguagacCCGCGUGCa -3'
miRNA:   3'- -UCAUCGGGUaGUACgGGU-------------GGUGCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.