miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 5' -54.7 NC_003521.1 + 138805 0.7 0.860328
Target:  5'- cGUGGCCCAg-GUGCUCaACCACGc-- -3'
miRNA:   3'- uCAUCGGGUagUACGGG-UGGUGCaug -5'
14615 5' -54.7 NC_003521.1 + 138047 0.68 0.921917
Target:  5'- --cGGCgCCGUCAUcgcgcagccgcugccGCuCUACCGCGUGCa -3'
miRNA:   3'- ucaUCG-GGUAGUA---------------CG-GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 136793 0.67 0.944663
Target:  5'- --gGGCUCAcggUCAcgcUGCCCGCCgacgaccccgGCGUGCg -3'
miRNA:   3'- ucaUCGGGU---AGU---ACGGGUGG----------UGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 136694 0.7 0.860328
Target:  5'- --cAGCuCCAUCGUGUCC-CCACG-GCg -3'
miRNA:   3'- ucaUCG-GGUAGUACGGGuGGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 134371 0.71 0.811507
Target:  5'- aAGUcGCUCAaCAUGCgCUACUGCGUGCg -3'
miRNA:   3'- -UCAuCGGGUaGUACG-GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 132715 0.67 0.948959
Target:  5'- cGUAGCCCc-CAUGCCCAagucCCcaaGCGcUACa -3'
miRNA:   3'- uCAUCGGGuaGUACGGGU----GG---UGC-AUG- -5'
14615 5' -54.7 NC_003521.1 + 130956 0.68 0.93538
Target:  5'- uGGUGGCCCcgCcgccGCCCGUCACGUc- -3'
miRNA:   3'- -UCAUCGGGuaGua--CGGGUGGUGCAug -5'
14615 5' -54.7 NC_003521.1 + 129843 0.66 0.963903
Target:  5'- --gGGCCCGUggcCGUGCCCuGCUAC-UGCg -3'
miRNA:   3'- ucaUCGGGUA---GUACGGG-UGGUGcAUG- -5'
14615 5' -54.7 NC_003521.1 + 128360 0.7 0.875058
Target:  5'- aGGUGGCCCcgCcgggcgcGCCCACCAgGgcCg -3'
miRNA:   3'- -UCAUCGGGuaGua-----CGGGUGGUgCauG- -5'
14615 5' -54.7 NC_003521.1 + 127957 0.66 0.972882
Target:  5'- uGUAGagCGUCAgauUGCCCACCuuGUAg -3'
miRNA:   3'- uCAUCggGUAGU---ACGGGUGGugCAUg -5'
14615 5' -54.7 NC_003521.1 + 127853 0.77 0.50772
Target:  5'- --cAGCCCGUCGggcagguUGCCCACCaggaugcgcgGCGUGCa -3'
miRNA:   3'- ucaUCGGGUAGU-------ACGGGUGG----------UGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 126080 0.66 0.972882
Target:  5'- uGUGGCCgCGcCAccCCCACgGCGUGCc -3'
miRNA:   3'- uCAUCGG-GUaGUacGGGUGgUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 126024 0.68 0.93538
Target:  5'- uGUAGUCCAugaucccgaaggUCGUGUcgccgggcuCCACCACGcUACg -3'
miRNA:   3'- uCAUCGGGU------------AGUACG---------GGUGGUGC-AUG- -5'
14615 5' -54.7 NC_003521.1 + 123308 0.7 0.860328
Target:  5'- cGUAGCCCAcggaGUGCaUACCGcCGUACg -3'
miRNA:   3'- uCAUCGGGUag--UACGgGUGGU-GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 121476 0.68 0.930389
Target:  5'- cGU-GUCCAUgGaggccggaccccUGCCCgACCGCGUGCg -3'
miRNA:   3'- uCAuCGGGUAgU------------ACGGG-UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 120720 0.69 0.908087
Target:  5'- uGUGGCCCuggacCGUGgCCACCAgGgGCa -3'
miRNA:   3'- uCAUCGGGua---GUACgGGUGGUgCaUG- -5'
14615 5' -54.7 NC_003521.1 + 120080 0.71 0.820086
Target:  5'- --aGGUCCGUCAgGUCCACCGuguCGUGCu -3'
miRNA:   3'- ucaUCGGGUAGUaCGGGUGGU---GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 119154 0.67 0.960495
Target:  5'- aAGgAGCCCGaCGUGUacuaCACCACGUc- -3'
miRNA:   3'- -UCaUCGGGUaGUACGg---GUGGUGCAug -5'
14615 5' -54.7 NC_003521.1 + 114511 0.71 0.828499
Target:  5'- cGUGGCCgc-CGUGCCCACCGCc--- -3'
miRNA:   3'- uCAUCGGguaGUACGGGUGGUGcaug -5'
14615 5' -54.7 NC_003521.1 + 113760 0.68 0.93538
Target:  5'- cGGUGGCCC----UGCCCggcACCGCGUc- -3'
miRNA:   3'- -UCAUCGGGuaguACGGG---UGGUGCAug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.