miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 5' -54.7 NC_003521.1 + 112011 0.66 0.97548
Target:  5'- --gAGCCCcaccgggaaaacGUUcugcgGUGCCCcgACCGCGUACu -3'
miRNA:   3'- ucaUCGGG------------UAG-----UACGGG--UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 111598 0.7 0.836736
Target:  5'- cGUGGCCag-CGgcgccggacUGCCCACCACGcGCc -3'
miRNA:   3'- uCAUCGGguaGU---------ACGGGUGGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 111276 0.66 0.97548
Target:  5'- --gGGCCCGcCGUGCcagcgCCGCCGCGa-- -3'
miRNA:   3'- ucaUCGGGUaGUACG-----GGUGGUGCaug -5'
14615 5' -54.7 NC_003521.1 + 110786 0.66 0.97548
Target:  5'- cGUGGCCa--CGUGCCCcuCCAUG-ACg -3'
miRNA:   3'- uCAUCGGguaGUACGGGu-GGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 109763 0.74 0.648279
Target:  5'- -cUGGCCCAgcugcugCAUGCCCACUugGggaugGCu -3'
miRNA:   3'- ucAUCGGGUa------GUACGGGUGGugCa----UG- -5'
14615 5' -54.7 NC_003521.1 + 109234 0.66 0.976467
Target:  5'- cGUGGCUCucggugcgcgugaugAUCAggcucugGCCCACCAcCGUGg -3'
miRNA:   3'- uCAUCGGG---------------UAGUa------CGGGUGGU-GCAUg -5'
14615 5' -54.7 NC_003521.1 + 102001 0.66 0.972882
Target:  5'- cGUAGCcgccgCCAUCAgGCgCGCCAUGgaggGCa -3'
miRNA:   3'- uCAUCG-----GGUAGUaCGgGUGGUGCa---UG- -5'
14615 5' -54.7 NC_003521.1 + 101878 0.67 0.956871
Target:  5'- aAGUAGCCguCGUCcugGUCCAUCuuGUACa -3'
miRNA:   3'- -UCAUCGG--GUAGua-CGGGUGGugCAUG- -5'
14615 5' -54.7 NC_003521.1 + 100954 0.68 0.919705
Target:  5'- cGUAGUCCAgacagaagcgcCGUGCCCGgCGCGcACg -3'
miRNA:   3'- uCAUCGGGUa----------GUACGGGUgGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 91521 0.68 0.93538
Target:  5'- cGGcGGCCgCGUCGUcgcGCuCCAgCACGUACu -3'
miRNA:   3'- -UCaUCGG-GUAGUA---CG-GGUgGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 90822 0.7 0.852658
Target:  5'- aGGUGGCgUCGUCGUGCggcgggugcgcgCCGCC-CGUGCu -3'
miRNA:   3'- -UCAUCG-GGUAGUACG------------GGUGGuGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 88597 0.77 0.489611
Target:  5'- --gAGCCCAU--UGCCCacaGCCACGUGCg -3'
miRNA:   3'- ucaUCGGGUAguACGGG---UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 85333 0.67 0.960495
Target:  5'- -uUGGCCCG-CG-GCCCGCCGCa--- -3'
miRNA:   3'- ucAUCGGGUaGUaCGGGUGGUGcaug -5'
14615 5' -54.7 NC_003521.1 + 84900 0.66 0.96832
Target:  5'- gAGUAGgCCGUCAgcGCCCGguCCAgcagggccguauccuCGUGCa -3'
miRNA:   3'- -UCAUCgGGUAGUa-CGGGU--GGU---------------GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 83925 0.67 0.960495
Target:  5'- --cGGCCCGUC--GCCC-CC-CGUGCc -3'
miRNA:   3'- ucaUCGGGUAGuaCGGGuGGuGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 78320 0.69 0.901931
Target:  5'- uGUAGCCgGUCAUGaaagaCGgCGCGUACc -3'
miRNA:   3'- uCAUCGGgUAGUACgg---GUgGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 77845 0.68 0.93538
Target:  5'- --gGGCCaccCGUGCCCACCACu--- -3'
miRNA:   3'- ucaUCGGguaGUACGGGUGGUGcaug -5'
14615 5' -54.7 NC_003521.1 + 76145 0.66 0.97548
Target:  5'- --cGGCCuCGUCGUcacgggGUUCACCACGUAg -3'
miRNA:   3'- ucaUCGG-GUAGUA------CGGGUGGUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 75917 0.69 0.895547
Target:  5'- --gGGCaCGUUGUGCUCGCgCACGUACg -3'
miRNA:   3'- ucaUCGgGUAGUACGGGUG-GUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 75116 0.66 0.976467
Target:  5'- aGGUGGCCCGcacgguggacggcuuUCGgcgGCCgACCugGg-- -3'
miRNA:   3'- -UCAUCGGGU---------------AGUa--CGGgUGGugCaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.