Results 81 - 100 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 68717 | 0.67 | 0.956871 |
Target: 5'- cGUGGCgCCGUCGgccGCCCG-CACGgACu -3' miRNA: 3'- uCAUCG-GGUAGUa--CGGGUgGUGCaUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 63406 | 0.69 | 0.908087 |
Target: 5'- gGGUAGUCgAguuuaCGgggaagcgGCCCGCCGCGUAUa -3' miRNA: 3'- -UCAUCGGgUa----GUa-------CGGGUGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 61862 | 0.67 | 0.948959 |
Target: 5'- cGgcGCCUGUcCAUGCgaCCACCACGgauaGCg -3' miRNA: 3'- uCauCGGGUA-GUACG--GGUGGUGCa---UG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 58902 | 0.67 | 0.953027 |
Target: 5'- cGUAGCCCugggcgCGUugggaGCCCugACCugGUAUa -3' miRNA: 3'- uCAUCGGGua----GUA-----CGGG--UGGugCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 55934 | 0.67 | 0.956871 |
Target: 5'- aGGUgaAGCCCAggcgCAUGagCACCGUGUGCa -3' miRNA: 3'- -UCA--UCGGGUa---GUACggGUGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 49872 | 0.69 | 0.910485 |
Target: 5'- aAGU-GCCCAUCAuccgUcgucuccccuacgucGCCCGCUACGUAa -3' miRNA: 3'- -UCAuCGGGUAGU----A---------------CGGGUGGUGCAUg -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 49374 | 0.68 | 0.925164 |
Target: 5'- uGGUGGUagaUCAUCAgcagaucguccaUGCUCugCGCGUACu -3' miRNA: 3'- -UCAUCG---GGUAGU------------ACGGGugGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 47515 | 0.66 | 0.97548 |
Target: 5'- ----cCCCAcCGUGCCCACCACc--- -3' miRNA: 3'- ucaucGGGUaGUACGGGUGGUGcaug -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 46584 | 0.72 | 0.756971 |
Target: 5'- cGGUAGCCCuUCuUGCCCAUgACGc-- -3' miRNA: 3'- -UCAUCGGGuAGuACGGGUGgUGCaug -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 45417 | 0.66 | 0.970091 |
Target: 5'- aGGUAGCCg---GUGCCCGCCGuCG-GCg -3' miRNA: 3'- -UCAUCGGguagUACGGGUGGU-GCaUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 44884 | 0.66 | 0.965206 |
Target: 5'- uGUGGCCCAcgcaggacggcuaugUCcaGUGCCCGCgagcaGCGUGa -3' miRNA: 3'- uCAUCGGGU---------------AG--UACGGGUGg----UGCAUg -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 43341 | 0.71 | 0.802767 |
Target: 5'- ---cGCgCCGUCcgGCCCGCCGCGc-- -3' miRNA: 3'- ucauCG-GGUAGuaCGGGUGGUGCaug -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 41114 | 0.67 | 0.944663 |
Target: 5'- uGGU-GCUgGUCAcccaguugcUGUCCaACCACGUGCa -3' miRNA: 3'- -UCAuCGGgUAGU---------ACGGG-UGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 36730 | 0.67 | 0.944663 |
Target: 5'- cAGUGGCgCCAcCAggugcacgugGCCCACgACGUGu -3' miRNA: 3'- -UCAUCG-GGUaGUa---------CGGGUGgUGCAUg -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 35452 | 0.75 | 0.57757 |
Target: 5'- -aUAGUCCAUCAUGCCgCGCagguCGUGCa -3' miRNA: 3'- ucAUCGGGUAGUACGG-GUGgu--GCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 34193 | 0.7 | 0.836736 |
Target: 5'- --cAGCUUAUCGUgGCCCACCAgGgcgGCg -3' miRNA: 3'- ucaUCGGGUAGUA-CGGGUGGUgCa--UG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 33160 | 0.66 | 0.972882 |
Target: 5'- -uUGGCCuCGUCG-GCCUcgGCCACGUuccACg -3' miRNA: 3'- ucAUCGG-GUAGUaCGGG--UGGUGCA---UG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 31221 | 0.71 | 0.820086 |
Target: 5'- cAGuUAGCCUGUUGUGUuuaccuCCGCUACGUGCg -3' miRNA: 3'- -UC-AUCGGGUAGUACG------GGUGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 29100 | 0.67 | 0.944663 |
Target: 5'- uGgcGUCCAgugCGUGaUCCGCCACGgcgGCa -3' miRNA: 3'- uCauCGGGUa--GUAC-GGGUGGUGCa--UG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 28310 | 0.66 | 0.974721 |
Target: 5'- --gAGCCuCAUCAUccagGCCUacguggucucgucgGCCAUGUGCg -3' miRNA: 3'- ucaUCGG-GUAGUA----CGGG--------------UGGUGCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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