miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 5' -54.7 NC_003521.1 + 222544 0.96 0.03868
Target:  5'- aGGUAGUagCCAUCAUGCCCACCACGUACc -3'
miRNA:   3'- -UCAUCG--GGUAGUACGGGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 34193 0.7 0.836736
Target:  5'- --cAGCUUAUCGUgGCCCACCAgGgcgGCg -3'
miRNA:   3'- ucaUCGGGUAGUA-CGGGUGGUgCa--UG- -5'
14615 5' -54.7 NC_003521.1 + 151804 0.7 0.844792
Target:  5'- aGGUGGCCgGcaCGUGuUCCACCACGUccGCg -3'
miRNA:   3'- -UCAUCGGgUa-GUAC-GGGUGGUGCA--UG- -5'
14615 5' -54.7 NC_003521.1 + 226604 0.7 0.852658
Target:  5'- cGUAGCCCAgcggcgUCAgggGCUCGCCGCa--- -3'
miRNA:   3'- uCAUCGGGU------AGUa--CGGGUGGUGcaug -5'
14615 5' -54.7 NC_003521.1 + 49374 0.68 0.925164
Target:  5'- uGGUGGUagaUCAUCAgcagaucguccaUGCUCugCGCGUACu -3'
miRNA:   3'- -UCAUCG---GGUAGU------------ACGGGugGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 166359 0.68 0.924629
Target:  5'- --aAGCCCAggaCGUGCUCGCugaacacggugcgCACGUACu -3'
miRNA:   3'- ucaUCGGGUa--GUACGGGUG-------------GUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 224724 0.68 0.919705
Target:  5'- ---cGCCCGUgGUGCUCGCCgACGcagGCg -3'
miRNA:   3'- ucauCGGGUAgUACGGGUGG-UGCa--UG- -5'
14615 5' -54.7 NC_003521.1 + 139523 0.68 0.919705
Target:  5'- cGUAGCCgAugcUgAUGCCgAUCAUGUGCu -3'
miRNA:   3'- uCAUCGGgU---AgUACGGgUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 100954 0.68 0.919705
Target:  5'- cGUAGUCCAgacagaagcgcCGUGCCCGgCGCGcACg -3'
miRNA:   3'- uCAUCGGGUa----------GUACGGGUgGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 120720 0.69 0.908087
Target:  5'- uGUGGCCCuggacCGUGgCCACCAgGgGCa -3'
miRNA:   3'- uCAUCGGGua---GUACgGGUGGUgCaUG- -5'
14615 5' -54.7 NC_003521.1 + 211383 0.69 0.901931
Target:  5'- uAGUAGgCCGUCAggcGCCgGCUcuCGUGCa -3'
miRNA:   3'- -UCAUCgGGUAGUa--CGGgUGGu-GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 146623 0.7 0.867797
Target:  5'- --gAGCCCGUCGUcgucuucaaggGCCCcgGCCACG-ACg -3'
miRNA:   3'- ucaUCGGGUAGUA-----------CGGG--UGGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 153084 0.69 0.888938
Target:  5'- --gGGCCCGggcCGggGCCCACCACGc-- -3'
miRNA:   3'- ucaUCGGGUa--GUa-CGGGUGGUGCaug -5'
14615 5' -54.7 NC_003521.1 + 200949 0.69 0.888938
Target:  5'- ---cGCCCAccccaaCGUGCacaaccCCACCACGUGCa -3'
miRNA:   3'- ucauCGGGUa-----GUACG------GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 75917 0.69 0.895547
Target:  5'- --gGGCaCGUUGUGCUCGCgCACGUACg -3'
miRNA:   3'- ucaUCGgGUAGUACGGGUG-GUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 78320 0.69 0.901931
Target:  5'- uGUAGCCgGUCAUGaaagaCGgCGCGUACc -3'
miRNA:   3'- uCAUCGGgUAGUACgg---GUgGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 75116 0.66 0.976467
Target:  5'- aGGUGGCCCGcacgguggacggcuuUCGgcgGCCgACCugGg-- -3'
miRNA:   3'- -UCAUCGGGU---------------AGUa--CGGgUGGugCaug -5'
14615 5' -54.7 NC_003521.1 + 43341 0.71 0.802767
Target:  5'- ---cGCgCCGUCcgGCCCGCCGCGc-- -3'
miRNA:   3'- ucauCG-GGUAGuaCGGGUGGUGCaug -5'
14615 5' -54.7 NC_003521.1 + 134371 0.71 0.811507
Target:  5'- aAGUcGCUCAaCAUGCgCUACUGCGUGCg -3'
miRNA:   3'- -UCAuCGGGUaGUACG-GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 31221 0.71 0.820086
Target:  5'- cAGuUAGCCUGUUGUGUuuaccuCCGCUACGUGCg -3'
miRNA:   3'- -UC-AUCGGGUAGUACG------GGUGGUGCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.