miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 5' -54.7 NC_003521.1 + 49872 0.69 0.910485
Target:  5'- aAGU-GCCCAUCAuccgUcgucuccccuacgucGCCCGCUACGUAa -3'
miRNA:   3'- -UCAuCGGGUAGU----A---------------CGGGUGGUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 205778 0.68 0.914012
Target:  5'- uGGUGGCgCCGcacggcaugagCGUGCCCaACCGCGUcCg -3'
miRNA:   3'- -UCAUCG-GGUa----------GUACGGG-UGGUGCAuG- -5'
14615 5' -54.7 NC_003521.1 + 138047 0.68 0.921917
Target:  5'- --cGGCgCCGUCAUcgcgcagccgcugccGCuCUACCGCGUGCa -3'
miRNA:   3'- ucaUCG-GGUAGUA---------------CG-GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 3120 0.68 0.925164
Target:  5'- --cAGCCCGUgugCAUGCCUGCCccgguacCGUACu -3'
miRNA:   3'- ucaUCGGGUA---GUACGGGUGGu------GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 121476 0.68 0.930389
Target:  5'- cGU-GUCCAUgGaggccggaccccUGCCCgACCGCGUGCg -3'
miRNA:   3'- uCAuCGGGUAgU------------ACGGG-UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 77845 0.68 0.93538
Target:  5'- --gGGCCaccCGUGCCCACCACu--- -3'
miRNA:   3'- ucaUCGGguaGUACGGGUGGUGcaug -5'
14615 5' -54.7 NC_003521.1 + 173255 0.68 0.93538
Target:  5'- -cUGGCCCG-CGggGCCCGCCGCcugACa -3'
miRNA:   3'- ucAUCGGGUaGUa-CGGGUGGUGca-UG- -5'
14615 5' -54.7 NC_003521.1 + 128360 0.7 0.875058
Target:  5'- aGGUGGCCCcgCcgggcgcGCCCACCAgGgcCg -3'
miRNA:   3'- -UCAUCGGGuaGua-----CGGGUGGUgCauG- -5'
14615 5' -54.7 NC_003521.1 + 138805 0.7 0.860328
Target:  5'- cGUGGCCCAg-GUGCUCaACCACGc-- -3'
miRNA:   3'- uCAUCGGGUagUACGGG-UGGUGCaug -5'
14615 5' -54.7 NC_003521.1 + 75116 0.66 0.976467
Target:  5'- aGGUGGCCCGcacgguggacggcuuUCGgcgGCCgACCugGg-- -3'
miRNA:   3'- -UCAUCGGGU---------------AGUa--CGGgUGGugCaug -5'
14615 5' -54.7 NC_003521.1 + 43341 0.71 0.802767
Target:  5'- ---cGCgCCGUCcgGCCCGCCGCGc-- -3'
miRNA:   3'- ucauCG-GGUAGuaCGGGUGGUGCaug -5'
14615 5' -54.7 NC_003521.1 + 134371 0.71 0.811507
Target:  5'- aAGUcGCUCAaCAUGCgCUACUGCGUGCg -3'
miRNA:   3'- -UCAuCGGGUaGUACG-GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 31221 0.71 0.820086
Target:  5'- cAGuUAGCCUGUUGUGUuuaccuCCGCUACGUGCg -3'
miRNA:   3'- -UC-AUCGGGUAGUACG------GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 198098 0.71 0.823472
Target:  5'- cGGU-GCCCuuguacgcuuuggaaAUCGUGCCgGCCACGUugucGCg -3'
miRNA:   3'- -UCAuCGGG---------------UAGUACGGgUGGUGCA----UG- -5'
14615 5' -54.7 NC_003521.1 + 169141 0.71 0.828499
Target:  5'- --cGGCCUAcggCGUGCUCACCAaGUGCg -3'
miRNA:   3'- ucaUCGGGUa--GUACGGGUGGUgCAUG- -5'
14615 5' -54.7 NC_003521.1 + 17028 0.71 0.828499
Target:  5'- --aGGCCCGUCGUcuggcgGCCCACgGCGguaacgGCg -3'
miRNA:   3'- ucaUCGGGUAGUA------CGGGUGgUGCa-----UG- -5'
14615 5' -54.7 NC_003521.1 + 111598 0.7 0.836736
Target:  5'- cGUGGCCag-CGgcgccggacUGCCCACCACGcGCc -3'
miRNA:   3'- uCAUCGGguaGU---------ACGGGUGGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 90822 0.7 0.852658
Target:  5'- aGGUGGCgUCGUCGUGCggcgggugcgcgCCGCC-CGUGCu -3'
miRNA:   3'- -UCAUCG-GGUAGUACG------------GGUGGuGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 123308 0.7 0.860328
Target:  5'- cGUAGCCCAcggaGUGCaUACCGcCGUACg -3'
miRNA:   3'- uCAUCGGGUag--UACGgGUGGU-GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 136694 0.7 0.860328
Target:  5'- --cAGCuCCAUCGUGUCC-CCACG-GCg -3'
miRNA:   3'- ucaUCG-GGUAGUACGGGuGGUGCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.