Results 81 - 100 of 107 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 123308 | 0.7 | 0.860328 |
Target: 5'- cGUAGCCCAcggaGUGCaUACCGcCGUACg -3' miRNA: 3'- uCAUCGGGUag--UACGgGUGGU-GCAUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 90822 | 0.7 | 0.852658 |
Target: 5'- aGGUGGCgUCGUCGUGCggcgggugcgcgCCGCC-CGUGCu -3' miRNA: 3'- -UCAUCG-GGUAGUACG------------GGUGGuGCAUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 111598 | 0.7 | 0.836736 |
Target: 5'- cGUGGCCag-CGgcgccggacUGCCCACCACGcGCc -3' miRNA: 3'- uCAUCGGguaGU---------ACGGGUGGUGCaUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 17028 | 0.71 | 0.828499 |
Target: 5'- --aGGCCCGUCGUcuggcgGCCCACgGCGguaacgGCg -3' miRNA: 3'- ucaUCGGGUAGUA------CGGGUGgUGCa-----UG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 169141 | 0.71 | 0.828499 |
Target: 5'- --cGGCCUAcggCGUGCUCACCAaGUGCg -3' miRNA: 3'- ucaUCGGGUa--GUACGGGUGGUgCAUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 198098 | 0.71 | 0.823472 |
Target: 5'- cGGU-GCCCuuguacgcuuuggaaAUCGUGCCgGCCACGUugucGCg -3' miRNA: 3'- -UCAuCGGG---------------UAGUACGGgUGGUGCA----UG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 31221 | 0.71 | 0.820086 |
Target: 5'- cAGuUAGCCUGUUGUGUuuaccuCCGCUACGUGCg -3' miRNA: 3'- -UC-AUCGGGUAGUACG------GGUGGUGCAUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 134371 | 0.71 | 0.811507 |
Target: 5'- aAGUcGCUCAaCAUGCgCUACUGCGUGCg -3' miRNA: 3'- -UCAuCGGGUaGUACG-GGUGGUGCAUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 43341 | 0.71 | 0.802767 |
Target: 5'- ---cGCgCCGUCcgGCCCGCCGCGc-- -3' miRNA: 3'- ucauCG-GGUAGuaCGGGUGGUGCaug -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 136694 | 0.7 | 0.860328 |
Target: 5'- --cAGCuCCAUCGUGUCC-CCACG-GCg -3' miRNA: 3'- ucaUCG-GGUAGUACGGGuGGUGCaUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 138805 | 0.7 | 0.860328 |
Target: 5'- cGUGGCCCAg-GUGCUCaACCACGc-- -3' miRNA: 3'- uCAUCGGGUagUACGGG-UGGUGCaug -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 3120 | 0.68 | 0.925164 |
Target: 5'- --cAGCCCGUgugCAUGCCUGCCccgguacCGUACu -3' miRNA: 3'- ucaUCGGGUA---GUACGGGUGGu------GCAUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 138047 | 0.68 | 0.921917 |
Target: 5'- --cGGCgCCGUCAUcgcgcagccgcugccGCuCUACCGCGUGCa -3' miRNA: 3'- ucaUCG-GGUAGUA---------------CG-GGUGGUGCAUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 205778 | 0.68 | 0.914012 |
Target: 5'- uGGUGGCgCCGcacggcaugagCGUGCCCaACCGCGUcCg -3' miRNA: 3'- -UCAUCG-GGUa----------GUACGGG-UGGUGCAuG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 49872 | 0.69 | 0.910485 |
Target: 5'- aAGU-GCCCAUCAuccgUcgucuccccuacgucGCCCGCUACGUAa -3' miRNA: 3'- -UCAuCGGGUAGU----A---------------CGGGUGGUGCAUg -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 163411 | 0.69 | 0.908087 |
Target: 5'- cGUGGcCCCGUCGucggcugccgcUGCCUACCAgGgUGCc -3' miRNA: 3'- uCAUC-GGGUAGU-----------ACGGGUGGUgC-AUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 63406 | 0.69 | 0.908087 |
Target: 5'- gGGUAGUCgAguuuaCGgggaagcgGCCCGCCGCGUAUa -3' miRNA: 3'- -UCAUCGGgUa----GUa-------CGGGUGGUGCAUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 203366 | 0.69 | 0.901931 |
Target: 5'- cGGUGGCCCGcgcgCGaGCCCACaGCGUcACc -3' miRNA: 3'- -UCAUCGGGUa---GUaCGGGUGgUGCA-UG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 722 | 0.69 | 0.888938 |
Target: 5'- ---cGCCCAccccaaCGUGCacaaccCCACCACGUGCa -3' miRNA: 3'- ucauCGGGUa-----GUACG------GGUGGUGCAUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 128360 | 0.7 | 0.875058 |
Target: 5'- aGGUGGCCCcgCcgggcgcGCCCACCAgGgcCg -3' miRNA: 3'- -UCAUCGGGuaGua-----CGGGUGGUgCauG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home