miRNA display CGI


Results 41 - 60 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 5' -54.7 NC_003521.1 + 126024 0.68 0.93538
Target:  5'- uGUAGUCCAugaucccgaaggUCGUGUcgccgggcuCCACCACGcUACg -3'
miRNA:   3'- uCAUCGGGU------------AGUACG---------GGUGGUGC-AUG- -5'
14615 5' -54.7 NC_003521.1 + 169141 0.71 0.828499
Target:  5'- --cGGCCUAcggCGUGCUCACCAaGUGCg -3'
miRNA:   3'- ucaUCGGGUa--GUACGGGUGGUgCAUG- -5'
14615 5' -54.7 NC_003521.1 + 17028 0.71 0.828499
Target:  5'- --aGGCCCGUCGUcuggcgGCCCACgGCGguaacgGCg -3'
miRNA:   3'- ucaUCGGGUAGUA------CGGGUGgUGCa-----UG- -5'
14615 5' -54.7 NC_003521.1 + 75116 0.66 0.976467
Target:  5'- aGGUGGCCCGcacgguggacggcuuUCGgcgGCCgACCugGg-- -3'
miRNA:   3'- -UCAUCGGGU---------------AGUa--CGGgUGGugCaug -5'
14615 5' -54.7 NC_003521.1 + 76145 0.66 0.97548
Target:  5'- --cGGCCuCGUCGUcacgggGUUCACCACGUAg -3'
miRNA:   3'- ucaUCGG-GUAGUA------CGGGUGGUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 15817 0.66 0.972882
Target:  5'- gAGcGGCUCAUCGUGCUgGgCAaGUGCg -3'
miRNA:   3'- -UCaUCGGGUAGUACGGgUgGUgCAUG- -5'
14615 5' -54.7 NC_003521.1 + 156193 0.66 0.967099
Target:  5'- cGGUGGCgCGUCAggaaGCCUacgucgaagggACgACGUGCg -3'
miRNA:   3'- -UCAUCGgGUAGUa---CGGG-----------UGgUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 119154 0.67 0.960495
Target:  5'- aAGgAGCCCGaCGUGUacuaCACCACGUc- -3'
miRNA:   3'- -UCaUCGGGUaGUACGg---GUGGUGCAug -5'
14615 5' -54.7 NC_003521.1 + 18310 0.67 0.953027
Target:  5'- -aUGGaCCCuUCGUGCCCAgCgGCGUGg -3'
miRNA:   3'- ucAUC-GGGuAGUACGGGU-GgUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 36730 0.67 0.944663
Target:  5'- cAGUGGCgCCAcCAggugcacgugGCCCACgACGUGu -3'
miRNA:   3'- -UCAUCG-GGUaGUa---------CGGGUGgUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 44884 0.66 0.965206
Target:  5'- uGUGGCCCAcgcaggacggcuaugUCcaGUGCCCGCgagcaGCGUGa -3'
miRNA:   3'- uCAUCGGGU---------------AG--UACGGGUGg----UGCAUg -5'
14615 5' -54.7 NC_003521.1 + 109234 0.66 0.976467
Target:  5'- cGUGGCUCucggugcgcgugaugAUCAggcucugGCCCACCAcCGUGg -3'
miRNA:   3'- uCAUCGGG---------------UAGUa------CGGGUGGU-GCAUg -5'
14615 5' -54.7 NC_003521.1 + 149569 0.66 0.97548
Target:  5'- cGGUuuCCCGccCGUGCCCAuCUACGUGg -3'
miRNA:   3'- -UCAucGGGUa-GUACGGGU-GGUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 238042 0.68 0.930389
Target:  5'- --gGGCCCGUCcuAUGCUgGCUugGUGa -3'
miRNA:   3'- ucaUCGGGUAG--UACGGgUGGugCAUg -5'
14615 5' -54.7 NC_003521.1 + 46584 0.72 0.756971
Target:  5'- cGGUAGCCCuUCuUGCCCAUgACGc-- -3'
miRNA:   3'- -UCAUCGGGuAGuACGGGUGgUGCaug -5'
14615 5' -54.7 NC_003521.1 + 151804 0.7 0.844792
Target:  5'- aGGUGGCCgGcaCGUGuUCCACCACGUccGCg -3'
miRNA:   3'- -UCAUCGGgUa-GUAC-GGGUGGUGCA--UG- -5'
14615 5' -54.7 NC_003521.1 + 226604 0.7 0.852658
Target:  5'- cGUAGCCCAgcggcgUCAgggGCUCGCCGCa--- -3'
miRNA:   3'- uCAUCGGGU------AGUa--CGGGUGGUGcaug -5'
14615 5' -54.7 NC_003521.1 + 41114 0.67 0.944663
Target:  5'- uGGU-GCUgGUCAcccaguugcUGUCCaACCACGUGCa -3'
miRNA:   3'- -UCAuCGGgUAGU---------ACGGG-UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 130956 0.68 0.93538
Target:  5'- uGGUGGCCCcgCcgccGCCCGUCACGUc- -3'
miRNA:   3'- -UCAUCGGGuaGua--CGGGUGGUGCAug -5'
14615 5' -54.7 NC_003521.1 + 113760 0.68 0.93538
Target:  5'- cGGUGGCCC----UGCCCggcACCGCGUc- -3'
miRNA:   3'- -UCAUCGGGuaguACGGG---UGGUGCAug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.