Results 61 - 80 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 120720 | 0.69 | 0.908087 |
Target: 5'- uGUGGCCCuggacCGUGgCCACCAgGgGCa -3' miRNA: 3'- uCAUCGGGua---GUACgGGUGGUgCaUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 179436 | 0.66 | 0.967099 |
Target: 5'- uAGUGGUacuccaCCAaCGUGUCCACCagccgcuugACGUACu -3' miRNA: 3'- -UCAUCG------GGUaGUACGGGUGG---------UGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 129843 | 0.66 | 0.963903 |
Target: 5'- --gGGCCCGUggcCGUGCCCuGCUAC-UGCg -3' miRNA: 3'- ucaUCGGGUA---GUACGGG-UGGUGcAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 149263 | 0.67 | 0.960495 |
Target: 5'- cGUGGCCaUGUCGUuccgcgucggcGCCCACaagUACGUGCu -3' miRNA: 3'- uCAUCGG-GUAGUA-----------CGGGUG---GUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 224724 | 0.68 | 0.919705 |
Target: 5'- ---cGCCCGUgGUGCUCGCCgACGcagGCg -3' miRNA: 3'- ucauCGGGUAgUACGGGUGG-UGCa--UG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 166359 | 0.68 | 0.924629 |
Target: 5'- --aAGCCCAggaCGUGCUCGCugaacacggugcgCACGUACu -3' miRNA: 3'- ucaUCGGGUa--GUACGGGUG-------------GUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 49374 | 0.68 | 0.925164 |
Target: 5'- uGGUGGUagaUCAUCAgcagaucguccaUGCUCugCGCGUACu -3' miRNA: 3'- -UCAUCG---GGUAGU------------ACGGGugGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 238042 | 0.68 | 0.930389 |
Target: 5'- --gGGCCCGUCcuAUGCUgGCUugGUGa -3' miRNA: 3'- ucaUCGGGUAG--UACGGgUGGugCAUg -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 113760 | 0.68 | 0.93538 |
Target: 5'- cGGUGGCCC----UGCCCggcACCGCGUc- -3' miRNA: 3'- -UCAUCGGGuaguACGGG---UGGUGCAug -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 153454 | 0.66 | 0.967099 |
Target: 5'- cGUAGgCCAgcg-GCUCgcagGCCACGUACa -3' miRNA: 3'- uCAUCgGGUaguaCGGG----UGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 84900 | 0.66 | 0.96832 |
Target: 5'- gAGUAGgCCGUCAgcGCCCGguCCAgcagggccguauccuCGUGCa -3' miRNA: 3'- -UCAUCgGGUAGUa-CGGGU--GGU---------------GCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 126080 | 0.66 | 0.972882 |
Target: 5'- uGUGGCCgCGcCAccCCCACgGCGUGCc -3' miRNA: 3'- uCAUCGG-GUaGUacGGGUGgUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 100954 | 0.68 | 0.919705 |
Target: 5'- cGUAGUCCAgacagaagcgcCGUGCCCGgCGCGcACg -3' miRNA: 3'- uCAUCGGGUa----------GUACGGGUgGUGCaUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 139523 | 0.68 | 0.919705 |
Target: 5'- cGUAGCCgAugcUgAUGCCgAUCAUGUGCu -3' miRNA: 3'- uCAUCGGgU---AgUACGGgUGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 109234 | 0.66 | 0.976467 |
Target: 5'- cGUGGCUCucggugcgcgugaugAUCAggcucugGCCCACCAcCGUGg -3' miRNA: 3'- uCAUCGGG---------------UAGUa------CGGGUGGU-GCAUg -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 149569 | 0.66 | 0.97548 |
Target: 5'- cGGUuuCCCGccCGUGCCCAuCUACGUGg -3' miRNA: 3'- -UCAucGGGUa-GUACGGGU-GGUGCAUg -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 112011 | 0.66 | 0.97548 |
Target: 5'- --gAGCCCcaccgggaaaacGUUcugcgGUGCCCcgACCGCGUACu -3' miRNA: 3'- ucaUCGGG------------UAG-----UACGGG--UGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 142571 | 0.66 | 0.972882 |
Target: 5'- --aGGCUCGcCGUGCCCGCCGUGgcCg -3' miRNA: 3'- ucaUCGGGUaGUACGGGUGGUGCauG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 33160 | 0.66 | 0.972882 |
Target: 5'- -uUGGCCuCGUCG-GCCUcgGCCACGUuccACg -3' miRNA: 3'- ucAUCGG-GUAGUaCGGG--UGGUGCA---UG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 127957 | 0.66 | 0.972882 |
Target: 5'- uGUAGagCGUCAgauUGCCCACCuuGUAg -3' miRNA: 3'- uCAUCggGUAGU---ACGGGUGGugCAUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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