Results 81 - 100 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 179436 | 0.66 | 0.967099 |
Target: 5'- uAGUGGUacuccaCCAaCGUGUCCACCagccgcuugACGUACu -3' miRNA: 3'- -UCAUCG------GGUaGUACGGGUGG---------UGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 153454 | 0.66 | 0.967099 |
Target: 5'- cGUAGgCCAgcg-GCUCgcagGCCACGUACa -3' miRNA: 3'- uCAUCgGGUaguaCGGG----UGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 84900 | 0.66 | 0.96832 |
Target: 5'- gAGUAGgCCGUCAgcGCCCGguCCAgcagggccguauccuCGUGCa -3' miRNA: 3'- -UCAUCgGGUAGUa-CGGGU--GGU---------------GCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 126080 | 0.66 | 0.972882 |
Target: 5'- uGUGGCCgCGcCAccCCCACgGCGUGCc -3' miRNA: 3'- uCAUCGG-GUaGUacGGGUGgUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 127957 | 0.66 | 0.972882 |
Target: 5'- uGUAGagCGUCAgauUGCCCACCuuGUAg -3' miRNA: 3'- uCAUCggGUAGU---ACGGGUGGugCAUg -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 33160 | 0.66 | 0.972882 |
Target: 5'- -uUGGCCuCGUCG-GCCUcgGCCACGUuccACg -3' miRNA: 3'- ucAUCGG-GUAGUaCGGG--UGGUGCA---UG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 142571 | 0.66 | 0.972882 |
Target: 5'- --aGGCUCGcCGUGCCCGCCGUGgcCg -3' miRNA: 3'- ucaUCGGGUaGUACGGGUGGUGCauG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 212334 | 0.66 | 0.972882 |
Target: 5'- --gAGCCCgacgGUCAcGCCCAUCACcacccgcugGUGCa -3' miRNA: 3'- ucaUCGGG----UAGUaCGGGUGGUG---------CAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 149263 | 0.67 | 0.960495 |
Target: 5'- cGUGGCCaUGUCGUuccgcgucggcGCCCACaagUACGUGCu -3' miRNA: 3'- uCAUCGG-GUAGUA-----------CGGGUG---GUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 83925 | 0.67 | 0.960495 |
Target: 5'- --cGGCCCGUC--GCCC-CC-CGUGCc -3' miRNA: 3'- ucaUCGGGUAGuaCGGGuGGuGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 85333 | 0.67 | 0.960495 |
Target: 5'- -uUGGCCCG-CG-GCCCGCCGCa--- -3' miRNA: 3'- ucAUCGGGUaGUaCGGGUGGUGcaug -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 41114 | 0.67 | 0.944663 |
Target: 5'- uGGU-GCUgGUCAcccaguugcUGUCCaACCACGUGCa -3' miRNA: 3'- -UCAuCGGgUAGU---------ACGGG-UGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 212484 | 0.67 | 0.944663 |
Target: 5'- cGUGGCCCAcacgcaCAUGgCCgacgagACCACGUAg -3' miRNA: 3'- uCAUCGGGUa-----GUACgGG------UGGUGCAUg -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 61862 | 0.67 | 0.948959 |
Target: 5'- cGgcGCCUGUcCAUGCgaCCACCACGgauaGCg -3' miRNA: 3'- uCauCGGGUA-GUACG--GGUGGUGCa---UG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 211761 | 0.67 | 0.948959 |
Target: 5'- cGUAGCCCGagAUGUCCgGCCAgGg-- -3' miRNA: 3'- uCAUCGGGUagUACGGG-UGGUgCaug -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 214618 | 0.67 | 0.948959 |
Target: 5'- gGGUAGCCCA----GCCagACCAgCGUGCu -3' miRNA: 3'- -UCAUCGGGUaguaCGGg-UGGU-GCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 55934 | 0.67 | 0.956871 |
Target: 5'- aGGUgaAGCCCAggcgCAUGagCACCGUGUGCa -3' miRNA: 3'- -UCA--UCGGGUa---GUACggGUGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 68717 | 0.67 | 0.956871 |
Target: 5'- cGUGGCgCCGUCGgccGCCCG-CACGgACu -3' miRNA: 3'- uCAUCG-GGUAGUa--CGGGUgGUGCaUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 226242 | 0.67 | 0.956871 |
Target: 5'- cGUAGCCCggCGUGUgCAgcuUCACGUcGCa -3' miRNA: 3'- uCAUCGGGuaGUACGgGU---GGUGCA-UG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 192484 | 0.67 | 0.960495 |
Target: 5'- cGGUcGGCUgAUCAccgUGUCCACgCugGUACu -3' miRNA: 3'- -UCA-UCGGgUAGU---ACGGGUG-GugCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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