Results 81 - 92 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14616 | 3' | -57.6 | NC_003521.1 | + | 139460 | 0.66 | 0.929802 |
Target: 5'- uGUAgcGGCAGCGGaaCUCGACCUCcuUGa -3' miRNA: 3'- -CGUacUCGUCGCC--GAGCUGGAGccAC- -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 80866 | 0.66 | 0.929802 |
Target: 5'- gGC-UGGGUAGCuGGCacu-CCUCGGUGc -3' miRNA: 3'- -CGuACUCGUCG-CCGagcuGGAGCCAC- -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 74577 | 0.66 | 0.919386 |
Target: 5'- gGCGacgGAGCGGCGGCgcggCGuCCcgCGGc- -3' miRNA: 3'- -CGUa--CUCGUCGCCGa---GCuGGa-GCCac -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 136055 | 0.66 | 0.918296 |
Target: 5'- uGCGaccUGGGCAGCGGCUgCGcgcucaucuccacGCuggagggCUCGGUGu -3' miRNA: 3'- -CGU---ACUCGUCGCCGA-GC-------------UG-------GAGCCAC- -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 134998 | 0.66 | 0.924704 |
Target: 5'- aGCAgGGGCAggccGUGGCgUCGcccuUCUCGGUGa -3' miRNA: 3'- -CGUaCUCGU----CGCCG-AGCu---GGAGCCAC- -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 226367 | 0.66 | 0.913848 |
Target: 5'- cGCggGAGCGGCGGCUgaCGccGCCgcaGGg- -3' miRNA: 3'- -CGuaCUCGUCGCCGA--GC--UGGag-CCac -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 140044 | 0.66 | 0.913848 |
Target: 5'- cCAUGAGCGGCaGGaa-GGCCUCGuUGc -3' miRNA: 3'- cGUACUCGUCG-CCgagCUGGAGCcAC- -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 238444 | 0.66 | 0.913848 |
Target: 5'- ---cGGGCAGgaGGCgcagggCGGCCUCGGc- -3' miRNA: 3'- cguaCUCGUCg-CCGa-----GCUGGAGCCac -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 220505 | 0.66 | 0.913848 |
Target: 5'- ---aGAGCAGCaGCguggUGGCCUCcuGGUGc -3' miRNA: 3'- cguaCUCGUCGcCGa---GCUGGAG--CCAC- -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 152677 | 0.66 | 0.90809 |
Target: 5'- uGCGUcAGCAGCcGCUCcGCggCUCGGUGc -3' miRNA: 3'- -CGUAcUCGUCGcCGAGcUG--GAGCCAC- -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 216372 | 0.66 | 0.90809 |
Target: 5'- gGCA-GAGCAGaagGGCU--GCCUCGGg- -3' miRNA: 3'- -CGUaCUCGUCg--CCGAgcUGGAGCCac -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 218034 | 0.66 | 0.929802 |
Target: 5'- --uUGGGCGGCGGCggCGuCCgcaGGUa -3' miRNA: 3'- cguACUCGUCGCCGa-GCuGGag-CCAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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