miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14616 3' -57.6 NC_003521.1 + 131045 0.7 0.761223
Target:  5'- --cUGGGCGGCGGCggcgGGCCUcuggacgCGGUGg -3'
miRNA:   3'- cguACUCGUCGCCGag--CUGGA-------GCCAC- -5'
14616 3' -57.6 NC_003521.1 + 129180 0.71 0.709551
Target:  5'- gGCGUGcGGCgguuuggguuucgccGGCGGUUCGACCUCGu-- -3'
miRNA:   3'- -CGUAC-UCG---------------UCGCCGAGCUGGAGCcac -5'
14616 3' -57.6 NC_003521.1 + 128611 0.68 0.861854
Target:  5'- uGCugauUGAGCAGCGcCUCcGCUUCGGa- -3'
miRNA:   3'- -CGu---ACUCGUCGCcGAGcUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 128524 0.67 0.882908
Target:  5'- cGC-UGGGCAgguGCGGCUggccCGACgUCaGGUGg -3'
miRNA:   3'- -CGuACUCGU---CGCCGA----GCUGgAG-CCAC- -5'
14616 3' -57.6 NC_003521.1 + 127537 0.75 0.492961
Target:  5'- aGCAUGuGCGGCGGCagcacgccgUCGGCCa-GGUGc -3'
miRNA:   3'- -CGUACuCGUCGCCG---------AGCUGGagCCAC- -5'
14616 3' -57.6 NC_003521.1 + 126570 0.69 0.806313
Target:  5'- cCGUGGGCAGCGGgaagccgccgUCGugC-CGGUGg -3'
miRNA:   3'- cGUACUCGUCGCCg---------AGCugGaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 125836 0.67 0.87609
Target:  5'- cGCGUcGGGCucGCGGUggUCGuacagcGCCUUGGUGg -3'
miRNA:   3'- -CGUA-CUCGu-CGCCG--AGC------UGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 124458 0.72 0.607866
Target:  5'- cGCGgcAGCAGCaGCUCGGCCUCGu-- -3'
miRNA:   3'- -CGUacUCGUCGcCGAGCUGGAGCcac -5'
14616 3' -57.6 NC_003521.1 + 123715 0.73 0.588274
Target:  5'- gGCGgcUGAGCGGCGGaggCGGCCUCGu-- -3'
miRNA:   3'- -CGU--ACUCGUCGCCga-GCUGGAGCcac -5'
14616 3' -57.6 NC_003521.1 + 123641 0.66 0.90809
Target:  5'- ---cGGGCGGCGGCagCGACggCGGg- -3'
miRNA:   3'- cguaCUCGUCGCCGa-GCUGgaGCCac -5'
14616 3' -57.6 NC_003521.1 + 120841 0.66 0.924704
Target:  5'- cGCAUGucGCc-CGGCUCGucgacgcccAUCUCGGUGc -3'
miRNA:   3'- -CGUACu-CGucGCCGAGC---------UGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 120540 0.67 0.895924
Target:  5'- ---cGAGCgcGGUGGCUCaACCcCGGUGc -3'
miRNA:   3'- cguaCUCG--UCGCCGAGcUGGaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 120134 0.7 0.73429
Target:  5'- aGCAccGAGguGCGGCUC-ACCUCcacggaGGUGc -3'
miRNA:   3'- -CGUa-CUCguCGCCGAGcUGGAG------CCAC- -5'
14616 3' -57.6 NC_003521.1 + 119826 0.67 0.88952
Target:  5'- ---gGAGCAGCGGCUcCGACUcCGa-- -3'
miRNA:   3'- cguaCUCGUCGCCGA-GCUGGaGCcac -5'
14616 3' -57.6 NC_003521.1 + 119593 0.68 0.854446
Target:  5'- cGC-UGGGCGGCGGgugcagcguCUCGugCUgcaGGUGg -3'
miRNA:   3'- -CGuACUCGUCGCC---------GAGCugGAg--CCAC- -5'
14616 3' -57.6 NC_003521.1 + 118930 0.7 0.747391
Target:  5'- gGCGUGGGCGGCGGCguccCGucagggccagcGCCcgagacagucccuccUCGGUGu -3'
miRNA:   3'- -CGUACUCGUCGCCGa---GC-----------UGG---------------AGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 116007 0.72 0.607866
Target:  5'- cGCAgGAGCAGCGuCUCcaGGCCgCGGUGg -3'
miRNA:   3'- -CGUaCUCGUCGCcGAG--CUGGaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 113567 0.67 0.895924
Target:  5'- cGCGaggagGAcGCGGUggGGCUgGGCCUCGGg- -3'
miRNA:   3'- -CGUa----CU-CGUCG--CCGAgCUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 113522 0.7 0.75295
Target:  5'- aGCGUGcGCAGCGGCUgGGaucCCUCGc-- -3'
miRNA:   3'- -CGUACuCGUCGCCGAgCU---GGAGCcac -5'
14616 3' -57.6 NC_003521.1 + 107336 0.73 0.568799
Target:  5'- ---cGcAGCAGCGGCgccaggugauccUCGACCUCGGg- -3'
miRNA:   3'- cguaC-UCGUCGCCG------------AGCUGGAGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.