Results 21 - 27 of 27 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 14616 | 5' | -55.9 | NC_003521.1 | + | 211158 | 0.67 | 0.914996 |
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Target: 5'- aGUCGCCcauGGUguuuuucgGAGGCgccgCGCUCgGUCUCg -3' miRNA: 3'- -UAGUGGu--CCAa-------CUCCG----GCGAG-UAGAG- -5' |
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| 14616 | 5' | -55.9 | NC_003521.1 | + | 217298 | 0.79 | 0.330345 |
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Target: 5'- uGUCACCGuGaUGAGGCUGCUCGUUUCg -3' miRNA: 3'- -UAGUGGUcCaACUCCGGCGAGUAGAG- -5' |
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| 14616 | 5' | -55.9 | NC_003521.1 | + | 220125 | 0.68 | 0.861655 |
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Target: 5'- -gCGCCAGGUUGgcGGGCgGUUCgcuGUCUUc -3' miRNA: 3'- uaGUGGUCCAAC--UCCGgCGAG---UAGAG- -5' |
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| 14616 | 5' | -55.9 | NC_003521.1 | + | 222719 | 1.08 | 0.004271 |
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Target: 5'- gAUCACCAGGUUGAGGCCGCUCAUCUCg -3' miRNA: 3'- -UAGUGGUCCAACUCCGGCGAGUAGAG- -5' |
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| 14616 | 5' | -55.9 | NC_003521.1 | + | 225985 | 0.66 | 0.940906 |
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Target: 5'- -gCGCCGcacguaguGGUUGGGGUCGUcCAUCUg -3' miRNA: 3'- uaGUGGU--------CCAACUCCGGCGaGUAGAg -5' |
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| 14616 | 5' | -55.9 | NC_003521.1 | + | 233380 | 0.73 | 0.629987 |
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Target: 5'- cGUCGCCGGGauccgGAGcuGCCGCUgcCGUCUCg -3' miRNA: 3'- -UAGUGGUCCaa---CUC--CGGCGA--GUAGAG- -5' |
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| 14616 | 5' | -55.9 | NC_003521.1 | + | 235020 | 0.67 | 0.920645 |
|
Target: 5'- -cCACCccuAGGUcucgGAGGCCGUacUCcUCUCa -3' miRNA: 3'- uaGUGG---UCCAa---CUCCGGCG--AGuAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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