miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14616 5' -55.9 NC_003521.1 + 211158 0.67 0.914996
Target:  5'- aGUCGCCcauGGUguuuuucgGAGGCgccgCGCUCgGUCUCg -3'
miRNA:   3'- -UAGUGGu--CCAa-------CUCCG----GCGAG-UAGAG- -5'
14616 5' -55.9 NC_003521.1 + 217298 0.79 0.330345
Target:  5'- uGUCACCGuGaUGAGGCUGCUCGUUUCg -3'
miRNA:   3'- -UAGUGGUcCaACUCCGGCGAGUAGAG- -5'
14616 5' -55.9 NC_003521.1 + 220125 0.68 0.861655
Target:  5'- -gCGCCAGGUUGgcGGGCgGUUCgcuGUCUUc -3'
miRNA:   3'- uaGUGGUCCAAC--UCCGgCGAG---UAGAG- -5'
14616 5' -55.9 NC_003521.1 + 222719 1.08 0.004271
Target:  5'- gAUCACCAGGUUGAGGCCGCUCAUCUCg -3'
miRNA:   3'- -UAGUGGUCCAACUCCGGCGAGUAGAG- -5'
14616 5' -55.9 NC_003521.1 + 225985 0.66 0.940906
Target:  5'- -gCGCCGcacguaguGGUUGGGGUCGUcCAUCUg -3'
miRNA:   3'- uaGUGGU--------CCAACUCCGGCGaGUAGAg -5'
14616 5' -55.9 NC_003521.1 + 233380 0.73 0.629987
Target:  5'- cGUCGCCGGGauccgGAGcuGCCGCUgcCGUCUCg -3'
miRNA:   3'- -UAGUGGUCCaa---CUC--CGGCGA--GUAGAG- -5'
14616 5' -55.9 NC_003521.1 + 235020 0.67 0.920645
Target:  5'- -cCACCccuAGGUcucgGAGGCCGUacUCcUCUCa -3'
miRNA:   3'- uaGUGG---UCCAa---CUCCGGCG--AGuAGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.