miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 173537 0.67 0.577664
Target:  5'- gGGCgucagGCGCAGcGGCuguCCUCCcUGCccGCCCu -3'
miRNA:   3'- -UCG-----UGCGUC-CCGu--GGAGG-ACG--CGGGu -5'
14617 5' -63.3 NC_003521.1 + 74845 0.67 0.577664
Target:  5'- gAGCGCGacuGGGuGCGCUUCCUcaGCcuGCCCGa -3'
miRNA:   3'- -UCGUGCg--UCC-CGUGGAGGA--CG--CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 155407 0.67 0.615884
Target:  5'- cGGgGgGCuGGGCACCggaggCCUGCuGCCg- -3'
miRNA:   3'- -UCgUgCGuCCCGUGGa----GGACG-CGGgu -5'
14617 5' -63.3 NC_003521.1 + 18170 0.67 0.587182
Target:  5'- gGGCAgCGUGGaGGCGCUgcgcgCCUGCcgGCCCu -3'
miRNA:   3'- -UCGU-GCGUC-CCGUGGa----GGACG--CGGGu -5'
14617 5' -63.3 NC_003521.1 + 129020 0.67 0.590997
Target:  5'- uGGCGcCGCcagAGGGCACCcgcagaaacucaaagUCCacgaggGCGCCCu -3'
miRNA:   3'- -UCGU-GCG---UCCCGUGG---------------AGGa-----CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 39615 0.67 0.596729
Target:  5'- cGGCccaGCGGGaGCagaccgccgGCCUCUcguUGCGCCCAc -3'
miRNA:   3'- -UCGug-CGUCC-CG---------UGGAGG---ACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 99946 0.67 0.596729
Target:  5'- cGCACGCAGGGgGgCggCgGCGCCUc -3'
miRNA:   3'- uCGUGCGUCCCgUgGagGaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 85860 0.67 0.596729
Target:  5'- cGCAgaugaUGCAGGGCACCag--GCGCUCGc -3'
miRNA:   3'- uCGU-----GCGUCCCGUGGaggaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 2324 0.67 0.606298
Target:  5'- uGCGCGCcggccuccuGGGGCugCUgacCCUGgGCCg- -3'
miRNA:   3'- uCGUGCG---------UCCCGugGA---GGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 130164 0.67 0.606298
Target:  5'- cGCugGCcgaccGGGCcgugACCgugCCgGCGCCCGg -3'
miRNA:   3'- uCGugCGu----CCCG----UGGa--GGaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 25539 0.67 0.625482
Target:  5'- cGCugGCGGuGGCcuGCCUCUgcaucuCGCCCu -3'
miRNA:   3'- uCGugCGUC-CCG--UGGAGGac----GCGGGu -5'
14617 5' -63.3 NC_003521.1 + 164564 0.68 0.558736
Target:  5'- cGCAgGCGGccguGCGCCUCUcGCGCCUc -3'
miRNA:   3'- uCGUgCGUCc---CGUGGAGGaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 18570 0.68 0.539987
Target:  5'- cGCGCGCAGcuggagagcGCGCUcgacugguUCCUGCGgCCCAg -3'
miRNA:   3'- uCGUGCGUCc--------CGUGG--------AGGACGC-GGGU- -5'
14617 5' -63.3 NC_003521.1 + 91111 0.68 0.534403
Target:  5'- gGGCACGCcgagcgagagcucacAGGGCuccACCUCCaGCuucccggcgggGCCCAc -3'
miRNA:   3'- -UCGUGCG---------------UCCCG---UGGAGGaCG-----------CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 40236 0.68 0.530692
Target:  5'- cAGCGguCGCAGGcGcCGCCUCCgGCaGCUCAc -3'
miRNA:   3'- -UCGU--GCGUCC-C-GUGGAGGaCG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 120076 0.68 0.568181
Target:  5'- cGGCAUcCAGGcGCGCCaCCUgGUGCCCc -3'
miRNA:   3'- -UCGUGcGUCC-CGUGGaGGA-CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 166643 0.68 0.521455
Target:  5'- cGCGCGCcGGGCGCCgcggCgCaGCGgCCAg -3'
miRNA:   3'- uCGUGCGuCCCGUGGa---G-GaCGCgGGU- -5'
14617 5' -63.3 NC_003521.1 + 73148 0.68 0.568181
Target:  5'- cAGCG-GCGGcGGCGCCgccucggCCUGCGaCCUg -3'
miRNA:   3'- -UCGUgCGUC-CCGUGGa------GGACGC-GGGu -5'
14617 5' -63.3 NC_003521.1 + 219146 0.68 0.558736
Target:  5'- gAGaCAgGCAGGGUACCagCagGCGCCgCAg -3'
miRNA:   3'- -UC-GUgCGUCCCGUGGagGa-CGCGG-GU- -5'
14617 5' -63.3 NC_003521.1 + 216363 0.68 0.557794
Target:  5'- cGCugGCcaggcagagcagaAGGGCuGCCUCggGCGUCCAc -3'
miRNA:   3'- uCGugCG-------------UCCCG-UGGAGgaCGCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.