miRNA display CGI


Results 61 - 80 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 164564 0.68 0.558736
Target:  5'- cGCAgGCGGccguGCGCCUCUcGCGCCUc -3'
miRNA:   3'- uCGUgCGUCc---CGUGGAGGaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 137088 0.68 0.549337
Target:  5'- -cCACGCGGcggugcugcGGCACCugaaccugguuuUCCUGUGCCCc -3'
miRNA:   3'- ucGUGCGUC---------CCGUGG------------AGGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 95080 0.68 0.5484
Target:  5'- uAGuCGCGCAggggcucGGGCGCCUUgaGCGgCCGc -3'
miRNA:   3'- -UC-GUGCGU-------CCCGUGGAGgaCGCgGGU- -5'
14617 5' -63.3 NC_003521.1 + 14229 0.68 0.521455
Target:  5'- cGC-CGCuGGGCuacGCCgugaUCCUGCuGCCCGa -3'
miRNA:   3'- uCGuGCGuCCCG---UGG----AGGACG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 18570 0.68 0.539987
Target:  5'- cGCGCGCAGcuggagagcGCGCUcgacugguUCCUGCGgCCCAg -3'
miRNA:   3'- uCGUGCGUCc--------CGUGG--------AGGACGC-GGGU- -5'
14617 5' -63.3 NC_003521.1 + 73148 0.68 0.568181
Target:  5'- cAGCG-GCGGcGGCGCCgccucggCCUGCGaCCUg -3'
miRNA:   3'- -UCGUgCGUC-CCGUGGa------GGACGC-GGGu -5'
14617 5' -63.3 NC_003521.1 + 219146 0.68 0.558736
Target:  5'- gAGaCAgGCAGGGUACCagCagGCGCCgCAg -3'
miRNA:   3'- -UC-GUgCGUCCCGUGGagGa-CGCGG-GU- -5'
14617 5' -63.3 NC_003521.1 + 216363 0.68 0.557794
Target:  5'- cGCugGCcaggcagagcagaAGGGCuGCCUCggGCGUCCAc -3'
miRNA:   3'- uCGugCG-------------UCCCG-UGGAGgaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 148711 0.68 0.549337
Target:  5'- cAGCugGUAcGGCauccucgagGCCUCC-GUGCCCAu -3'
miRNA:   3'- -UCGugCGUcCCG---------UGGAGGaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 196410 0.68 0.539987
Target:  5'- gGGCGgGCAGcGGCACagacagUCgCUGuCGCCCGg -3'
miRNA:   3'- -UCGUgCGUC-CCGUGg-----AG-GAC-GCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 37486 0.68 0.539987
Target:  5'- uGC-CGCAGGGCACCcCCauCGCCa- -3'
miRNA:   3'- uCGuGCGUCCCGUGGaGGacGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 240464 0.68 0.530692
Target:  5'- cAGCGguCGCAGGcGcCGCCUCCgGCaGCUCAc -3'
miRNA:   3'- -UCGU--GCGUCC-C-GUGGAGGaCG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 165656 0.68 0.521455
Target:  5'- cAGCACGCcgcGcGGCACCa--UGCGUCCAg -3'
miRNA:   3'- -UCGUGCGu--C-CCGUGGaggACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 88548 0.69 0.511369
Target:  5'- cGGCcuccucgGgGCAGGGCACCagCUG-GCCCGc -3'
miRNA:   3'- -UCG-------UgCGUCCCGUGGagGACgCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 74148 0.69 0.466623
Target:  5'- uGGCGCGCcacGGGGCccaggugccgcugGCCgacugcgCCgcgGCGCCCGg -3'
miRNA:   3'- -UCGUGCG---UCCCG-------------UGGa------GGa--CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 145724 0.69 0.476299
Target:  5'- aAGCGCGCGcGGC-CgCUCaagGCGCCCGa -3'
miRNA:   3'- -UCGUGCGUcCCGuG-GAGga-CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 60152 0.69 0.485181
Target:  5'- gAGCACGCAGGccucGCGCCaacgCCUGgaGCCg- -3'
miRNA:   3'- -UCGUGCGUCC----CGUGGa---GGACg-CGGgu -5'
14617 5' -63.3 NC_003521.1 + 102843 0.69 0.485181
Target:  5'- aAGCGCGcCAGGGCGCCcguggcguaggUCUGgGCCg- -3'
miRNA:   3'- -UCGUGC-GUCCCGUGGa----------GGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 131460 0.69 0.493242
Target:  5'- aGGcCGCGCucucGGCcucgucgGCCUCCUGCGCCg- -3'
miRNA:   3'- -UC-GUGCGuc--CCG-------UGGAGGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 55728 0.69 0.503176
Target:  5'- cGGCGCGCA--GCGCCUCCcaGCGCgCGg -3'
miRNA:   3'- -UCGUGCGUccCGUGGAGGa-CGCGgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.