miRNA display CGI


Results 81 - 100 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 74148 0.69 0.466623
Target:  5'- uGGCGCGCcacGGGGCccaggugccgcugGCCgacugcgCCgcgGCGCCCGg -3'
miRNA:   3'- -UCGUGCG---UCCCG-------------UGGa------GGa--CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 148517 0.69 0.512282
Target:  5'- uGC-CGCGGcuGCGCCUCCUcccGCGCCUu -3'
miRNA:   3'- uCGuGCGUCc-CGUGGAGGA---CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 144171 0.69 0.512282
Target:  5'- aAGCACGCc-GGCGCCgCCUGcCGCgCGc -3'
miRNA:   3'- -UCGUGCGucCCGUGGaGGAC-GCGgGU- -5'
14617 5' -63.3 NC_003521.1 + 85397 0.69 0.512282
Target:  5'- cGGCuGCGCuuGGCcggcagcagGCCUCCgGUGCCCAg -3'
miRNA:   3'- -UCG-UGCGucCCG---------UGGAGGaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 88548 0.69 0.511369
Target:  5'- cGGCcuccucgGgGCAGGGCACCagCUG-GCCCGc -3'
miRNA:   3'- -UCG-------UgCGUCCCGUGGagGACgCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 55728 0.69 0.503176
Target:  5'- cGGCGCGCA--GCGCCUCCcaGCGCgCGg -3'
miRNA:   3'- -UCGUGCGUccCGUGGAGGa-CGCGgGU- -5'
14617 5' -63.3 NC_003521.1 + 131460 0.69 0.493242
Target:  5'- aGGcCGCGCucucGGCcucgucgGCCUCCUGCGCCg- -3'
miRNA:   3'- -UC-GUGCGuc--CCG-------UGGAGGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 102843 0.69 0.485181
Target:  5'- aAGCGCGcCAGGGCGCCcguggcguaggUCUGgGCCg- -3'
miRNA:   3'- -UCGUGC-GUCCCGUGGa----------GGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 60152 0.69 0.485181
Target:  5'- gAGCACGCAGGccucGCGCCaacgCCUGgaGCCg- -3'
miRNA:   3'- -UCGUGCGUCC----CGUGGa---GGACg-CGGgu -5'
14617 5' -63.3 NC_003521.1 + 145724 0.69 0.476299
Target:  5'- aAGCGCGCGcGGC-CgCUCaagGCGCCCGa -3'
miRNA:   3'- -UCGUGCGUcCCGuG-GAGga-CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 95168 0.69 0.458783
Target:  5'- cGCGgGCcgAGGGCACCUC--GCGCUCGg -3'
miRNA:   3'- uCGUgCG--UCCCGUGGAGgaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 110466 0.7 0.450154
Target:  5'- gAGCGCGCAcGGCGCCUgCgGCcgcacguugaGCCCGa -3'
miRNA:   3'- -UCGUGCGUcCCGUGGAgGaCG----------CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 135018 0.7 0.450154
Target:  5'- uGGC-UGCcGGGCACCguggCCUGCGUCaCGg -3'
miRNA:   3'- -UCGuGCGuCCCGUGGa---GGACGCGG-GU- -5'
14617 5' -63.3 NC_003521.1 + 39809 0.7 0.441616
Target:  5'- cGGgGCGCcGGGCGguCCUCCgccgaugGCGCCUg -3'
miRNA:   3'- -UCgUGCGuCCCGU--GGAGGa------CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 66673 0.7 0.441616
Target:  5'- uGCAUGCGGGucuuugcucaGUACCUCCUGgGCUg- -3'
miRNA:   3'- uCGUGCGUCC----------CGUGGAGGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 205838 0.7 0.43317
Target:  5'- cGCugGCcccGGagACCUUCUGCGCCCGc -3'
miRNA:   3'- uCGugCGuc-CCg-UGGAGGACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 212654 0.7 0.408409
Target:  5'- gAGCAUGCAGGGUAUCagCaUGC-CCCAg -3'
miRNA:   3'- -UCGUGCGUCCCGUGGagG-ACGcGGGU- -5'
14617 5' -63.3 NC_003521.1 + 149346 0.7 0.441616
Target:  5'- aGGUGCGCGaGGUcuGCUUCCUGCGCaCCu -3'
miRNA:   3'- -UCGUGCGUcCCG--UGGAGGACGCG-GGu -5'
14617 5' -63.3 NC_003521.1 + 153605 0.7 0.441616
Target:  5'- cAGCGC-CAGGuuggcgcucaGCAgCUCCUGCGCCa- -3'
miRNA:   3'- -UCGUGcGUCC----------CGUgGAGGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 240036 0.7 0.441616
Target:  5'- cGGgGCGCcGGGCGguCCUCCgccgaugGCGCCUg -3'
miRNA:   3'- -UCgUGCGuCCCGU--GGAGGa------CGCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.