miRNA display CGI


Results 101 - 120 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 135018 0.7 0.450154
Target:  5'- uGGC-UGCcGGGCACCguggCCUGCGUCaCGg -3'
miRNA:   3'- -UCGuGCGuCCCGUGGa---GGACGCGG-GU- -5'
14617 5' -63.3 NC_003521.1 + 205838 0.7 0.43317
Target:  5'- cGCugGCcccGGagACCUUCUGCGCCCGc -3'
miRNA:   3'- uCGugCGuc-CCg-UGGAGGACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 201275 0.7 0.416564
Target:  5'- uGGCcgGCGuCGGGGcCACCgaCCUGCGCCa- -3'
miRNA:   3'- -UCG--UGC-GUCCC-GUGGa-GGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 66673 0.7 0.441616
Target:  5'- uGCAUGCGGGucuuugcucaGUACCUCCUGgGCUg- -3'
miRNA:   3'- uCGUGCGUCC----------CGUGGAGGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 167148 0.7 0.441616
Target:  5'- gAGCAgCGCcuuGGGCGCCUCggGCGUCUu -3'
miRNA:   3'- -UCGU-GCGu--CCCGUGGAGgaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 39809 0.7 0.441616
Target:  5'- cGGgGCGCcGGGCGguCCUCCgccgaugGCGCCUg -3'
miRNA:   3'- -UCgUGCGuCCCGU--GGAGGa------CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 106717 0.7 0.416564
Target:  5'- aGGCGCGCAGgacggccaccaGGUccuggauggacACCUCCgcguccaggGCGCCCAg -3'
miRNA:   3'- -UCGUGCGUC-----------CCG-----------UGGAGGa--------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 110466 0.7 0.450154
Target:  5'- gAGCGCGCAcGGCGCCUgCgGCcgcacguugaGCCCGa -3'
miRNA:   3'- -UCGUGCGUcCCGUGGAgGaCG----------CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 1047 0.7 0.416564
Target:  5'- uGGCcgGCGuCGGGGcCACCgaCCUGCGCCa- -3'
miRNA:   3'- -UCG--UGC-GUCCC-GUGGa-GGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 162884 0.7 0.43317
Target:  5'- cGCGCGCAGGuGgGCCgcuacugCCUGCaggacGCCCu -3'
miRNA:   3'- uCGUGCGUCC-CgUGGa------GGACG-----CGGGu -5'
14617 5' -63.3 NC_003521.1 + 17659 0.71 0.392401
Target:  5'- cAGCAC-CGGGGCACCacgguggcCCUGCGuaaCCCGg -3'
miRNA:   3'- -UCGUGcGUCCCGUGGa-------GGACGC---GGGU- -5'
14617 5' -63.3 NC_003521.1 + 34676 0.71 0.384551
Target:  5'- cAGCuCGUAGaGGCAguCCUCCUGCGCgUCGu -3'
miRNA:   3'- -UCGuGCGUC-CCGU--GGAGGACGCG-GGU- -5'
14617 5' -63.3 NC_003521.1 + 50232 0.71 0.384551
Target:  5'- cAGguCGCGGGGC-CaCUCCU-CGCCCu -3'
miRNA:   3'- -UCguGCGUCCCGuG-GAGGAcGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 153496 0.71 0.392401
Target:  5'- uGcCGCGCAGcuGCGCCUCCagGCGCUCGc -3'
miRNA:   3'- uC-GUGCGUCc-CGUGGAGGa-CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 24660 0.71 0.384551
Target:  5'- uGGCGCuGguGGuCACCUUCcugUGCGCCCAg -3'
miRNA:   3'- -UCGUG-CguCCcGUGGAGG---ACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 167400 0.71 0.400353
Target:  5'- gGGCACGCuagugGGGGCGCUUCggCUGCuGUCCu -3'
miRNA:   3'- -UCGUGCG-----UCCCGUGGAG--GACG-CGGGu -5'
14617 5' -63.3 NC_003521.1 + 183228 0.72 0.346893
Target:  5'- cGGCACGCugacucGGGGUucGCCgCCgGCGCCCu -3'
miRNA:   3'- -UCGUGCG------UCCCG--UGGaGGaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 174774 0.72 0.349807
Target:  5'- cGGCAUGguGGGUACCgucuugcccagcauuUCUgucaGCGCCCAc -3'
miRNA:   3'- -UCGUGCguCCCGUGG---------------AGGa---CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 120631 0.72 0.35421
Target:  5'- cAGCGgGCAGGGCACC-CacaCGCCCu -3'
miRNA:   3'- -UCGUgCGUCCCGUGGaGgacGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 150444 0.72 0.342555
Target:  5'- gAGCGCGCccGGGguCCUCCUggucuggggcggcgaGCGCCUg -3'
miRNA:   3'- -UCGUGCGu-CCCguGGAGGA---------------CGCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.