miRNA display CGI


Results 21 - 40 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 120631 0.72 0.35421
Target:  5'- cAGCGgGCAGGGCACC-CacaCGCCCu -3'
miRNA:   3'- -UCGUgCGUCCCGUGGaGgacGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 50232 0.71 0.384551
Target:  5'- cAGguCGCGGGGC-CaCUCCU-CGCCCu -3'
miRNA:   3'- -UCguGCGUCCCGuG-GAGGAcGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 34676 0.71 0.384551
Target:  5'- cAGCuCGUAGaGGCAguCCUCCUGCGCgUCGu -3'
miRNA:   3'- -UCGuGCGUC-CCGU--GGAGGACGCG-GGU- -5'
14617 5' -63.3 NC_003521.1 + 153496 0.71 0.392401
Target:  5'- uGcCGCGCAGcuGCGCCUCCagGCGCUCGc -3'
miRNA:   3'- uC-GUGCGUCc-CGUGGAGGa-CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 167400 0.71 0.400353
Target:  5'- gGGCACGCuagugGGGGCGCUUCggCUGCuGUCCu -3'
miRNA:   3'- -UCGUGCG-----UCCCGUGGAG--GACG-CGGGu -5'
14617 5' -63.3 NC_003521.1 + 24660 0.71 0.384551
Target:  5'- uGGCGCuGguGGuCACCUUCcugUGCGCCCAg -3'
miRNA:   3'- -UCGUG-CguCCcGUGGAGG---ACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 17659 0.71 0.392401
Target:  5'- cAGCAC-CGGGGCACCacgguggcCCUGCGuaaCCCGg -3'
miRNA:   3'- -UCGUGcGUCCCGUGGa-------GGACGC---GGGU- -5'
14617 5' -63.3 NC_003521.1 + 78666 0.7 0.441616
Target:  5'- gGGCuucucgGCGCAGGGgaaGCCgccgUCUGCGCUCAu -3'
miRNA:   3'- -UCG------UGCGUCCCg--UGGa---GGACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 101140 0.7 0.423989
Target:  5'- gGGCACGCGGaaagcgcGGCGCggUCUGCGUCCc -3'
miRNA:   3'- -UCGUGCGUC-------CCGUGgaGGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 162884 0.7 0.43317
Target:  5'- cGCGCGCAGGuGgGCCgcuacugCCUGCaggacGCCCu -3'
miRNA:   3'- uCGUGCGUCC-CgUGGa------GGACG-----CGGGu -5'
14617 5' -63.3 NC_003521.1 + 106717 0.7 0.416564
Target:  5'- aGGCGCGCAGgacggccaccaGGUccuggauggacACCUCCgcguccaggGCGCCCAg -3'
miRNA:   3'- -UCGUGCGUC-----------CCG-----------UGGAGGa--------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 74641 0.7 0.424819
Target:  5'- uGGUGCGCGGGacccuggaGCGCCgcucggcCCUGCGCUCGc -3'
miRNA:   3'- -UCGUGCGUCC--------CGUGGa------GGACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 130633 0.7 0.424819
Target:  5'- cGCACGcCAGcGGCcuccaccccaACCUCCUGUGCUa- -3'
miRNA:   3'- uCGUGC-GUC-CCG----------UGGAGGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 145173 0.7 0.424819
Target:  5'- cAGuCGCGCAacuccgucuGGCACCUgCUGCGCCUc -3'
miRNA:   3'- -UC-GUGCGUc--------CCGUGGAgGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 149346 0.7 0.441616
Target:  5'- aGGUGCGCGaGGUcuGCUUCCUGCGCaCCu -3'
miRNA:   3'- -UCGUGCGUcCCG--UGGAGGACGCG-GGu -5'
14617 5' -63.3 NC_003521.1 + 153605 0.7 0.441616
Target:  5'- cAGCGC-CAGGuuggcgcucaGCAgCUCCUGCGCCa- -3'
miRNA:   3'- -UCGUGcGUCC----------CGUgGAGGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 240036 0.7 0.441616
Target:  5'- cGGgGCGCcGGGCGguCCUCCgccgaugGCGCCUg -3'
miRNA:   3'- -UCgUGCGuCCCGU--GGAGGa------CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 212654 0.7 0.408409
Target:  5'- gAGCAUGCAGGGUAUCagCaUGC-CCCAg -3'
miRNA:   3'- -UCGUGCGUCCCGUGGagG-ACGcGGGU- -5'
14617 5' -63.3 NC_003521.1 + 201275 0.7 0.416564
Target:  5'- uGGCcgGCGuCGGGGcCACCgaCCUGCGCCa- -3'
miRNA:   3'- -UCG--UGC-GUCCC-GUGGa-GGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 1047 0.7 0.416564
Target:  5'- uGGCcgGCGuCGGGGcCACCgaCCUGCGCCa- -3'
miRNA:   3'- -UCG--UGC-GUCCC-GUGGa-GGACGCGGgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.