miRNA display CGI


Results 81 - 100 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 91111 0.68 0.534403
Target:  5'- gGGCACGCcgagcgagagcucacAGGGCuccACCUCCaGCuucccggcgggGCCCAc -3'
miRNA:   3'- -UCGUGCG---------------UCCCG---UGGAGGaCG-----------CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 175587 0.68 0.530692
Target:  5'- cGCGCGCGGauccaggccGGCcaguAUCUCCUGCGUCUc -3'
miRNA:   3'- uCGUGCGUC---------CCG----UGGAGGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 40236 0.68 0.530692
Target:  5'- cAGCGguCGCAGGcGcCGCCUCCgGCaGCUCAc -3'
miRNA:   3'- -UCGU--GCGUCC-C-GUGGAGGaCG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 37486 0.68 0.539987
Target:  5'- uGC-CGCAGGGCACCcCCauCGCCa- -3'
miRNA:   3'- uCGuGCGUCCCGUGGaGGacGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 120076 0.68 0.568181
Target:  5'- cGGCAUcCAGGcGCGCCaCCUgGUGCCCc -3'
miRNA:   3'- -UCGUGcGUCC-CGUGGaGGA-CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 197682 0.68 0.549337
Target:  5'- cAGCGCGU---GCACCUCCa-CGCCCAg -3'
miRNA:   3'- -UCGUGCGuccCGUGGAGGacGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 202552 0.67 0.606298
Target:  5'- uGCGCGCcggccuccuGGGGCugCUgacCCUGgGCCg- -3'
miRNA:   3'- uCGUGCG---------UCCCGugGA---GGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 27424 0.67 0.625482
Target:  5'- cGCACGUAGG---CCUCCagGCaGCCCAg -3'
miRNA:   3'- uCGUGCGUCCcguGGAGGa-CG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 223155 0.67 0.615884
Target:  5'- gGGuUACGCAGGGcCACCgug-GUGCCCc -3'
miRNA:   3'- -UC-GUGCGUCCC-GUGGaggaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 211135 0.67 0.615884
Target:  5'- gAGgACGCAGcGGaucauCCUCCaGuCGCCCAu -3'
miRNA:   3'- -UCgUGCGUC-CCgu---GGAGGaC-GCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 145427 0.67 0.576714
Target:  5'- gGGCuuGCuGGGCGCCUcgguggaCCUGUGCUUc -3'
miRNA:   3'- -UCGugCGuCCCGUGGA-------GGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 116874 0.67 0.577664
Target:  5'- cGCGCGCAGuGGCGCggCUgcggcgGCGCgCCGg -3'
miRNA:   3'- uCGUGCGUC-CCGUGgaGGa-----CGCG-GGU- -5'
14617 5' -63.3 NC_003521.1 + 224527 0.67 0.577664
Target:  5'- aAGC-CGCcGGGCcgguaggcACC-CCgGCGCCCAg -3'
miRNA:   3'- -UCGuGCGuCCCG--------UGGaGGaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 154006 0.67 0.584323
Target:  5'- cAGCACGCAcGGGUcgcgcagcACCUggugcaugcucuugCCgcggcagGCGCCCAu -3'
miRNA:   3'- -UCGUGCGU-CCCG--------UGGA--------------GGa------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 46518 0.67 0.587182
Target:  5'- uGCugGCAcacGGGCGucuUCUCCagGCGCaCCAg -3'
miRNA:   3'- uCGugCGU---CCCGU---GGAGGa-CGCG-GGU- -5'
14617 5' -63.3 NC_003521.1 + 122643 0.67 0.613007
Target:  5'- cAGC-CGCAuGGGCAgCaggUCCUggagcgcgaucgagGCGCCCAg -3'
miRNA:   3'- -UCGuGCGU-CCCGUgG---AGGA--------------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 239842 0.67 0.596729
Target:  5'- cGGCccaGCGGGaGCagaccgccgGCCUCUcguUGCGCCCAc -3'
miRNA:   3'- -UCGug-CGUCC-CG---------UGGAGG---ACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 68156 0.67 0.596729
Target:  5'- --gGCGCAGGuGCugCgUCUGCGCCa- -3'
miRNA:   3'- ucgUGCGUCC-CGugGaGGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 113024 0.67 0.596729
Target:  5'- cGGCACGUgcuGGuGCGCCUCUUucacaaacGCGCCg- -3'
miRNA:   3'- -UCGUGCGu--CC-CGUGGAGGA--------CGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 168939 0.67 0.596729
Target:  5'- cGCAgGCAGGGcCGCCg-CUGuCGCCg- -3'
miRNA:   3'- uCGUgCGUCCC-GUGGagGAC-GCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.