Results 41 - 60 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14617 | 5' | -63.3 | NC_003521.1 | + | 66673 | 0.7 | 0.441616 |
Target: 5'- uGCAUGCGGGucuuugcucaGUACCUCCUGgGCUg- -3' miRNA: 3'- uCGUGCGUCC----------CGUGGAGGACgCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 39809 | 0.7 | 0.441616 |
Target: 5'- cGGgGCGCcGGGCGguCCUCCgccgaugGCGCCUg -3' miRNA: 3'- -UCgUGCGuCCCGU--GGAGGa------CGCGGGu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 167148 | 0.7 | 0.441616 |
Target: 5'- gAGCAgCGCcuuGGGCGCCUCggGCGUCUu -3' miRNA: 3'- -UCGU-GCGu--CCCGUGGAGgaCGCGGGu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 149346 | 0.7 | 0.441616 |
Target: 5'- aGGUGCGCGaGGUcuGCUUCCUGCGCaCCu -3' miRNA: 3'- -UCGUGCGUcCCG--UGGAGGACGCG-GGu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 135018 | 0.7 | 0.450154 |
Target: 5'- uGGC-UGCcGGGCACCguggCCUGCGUCaCGg -3' miRNA: 3'- -UCGuGCGuCCCGUGGa---GGACGCGG-GU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 110466 | 0.7 | 0.450154 |
Target: 5'- gAGCGCGCAcGGCGCCUgCgGCcgcacguugaGCCCGa -3' miRNA: 3'- -UCGUGCGUcCCGUGGAgGaCG----------CGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 95168 | 0.69 | 0.458783 |
Target: 5'- cGCGgGCcgAGGGCACCUC--GCGCUCGg -3' miRNA: 3'- uCGUgCG--UCCCGUGGAGgaCGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 74148 | 0.69 | 0.466623 |
Target: 5'- uGGCGCGCcacGGGGCccaggugccgcugGCCgacugcgCCgcgGCGCCCGg -3' miRNA: 3'- -UCGUGCG---UCCCG-------------UGGa------GGa--CGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 139418 | 0.69 | 0.476299 |
Target: 5'- cAGC-CGCAcGGGC-UCUCCUGCGUggCCGu -3' miRNA: 3'- -UCGuGCGU-CCCGuGGAGGACGCG--GGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 145724 | 0.69 | 0.476299 |
Target: 5'- aAGCGCGCGcGGC-CgCUCaagGCGCCCGa -3' miRNA: 3'- -UCGUGCGUcCCGuG-GAGga-CGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 60152 | 0.69 | 0.485181 |
Target: 5'- gAGCACGCAGGccucGCGCCaacgCCUGgaGCCg- -3' miRNA: 3'- -UCGUGCGUCC----CGUGGa---GGACg-CGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 102843 | 0.69 | 0.485181 |
Target: 5'- aAGCGCGcCAGGGCGCCcguggcguaggUCUGgGCCg- -3' miRNA: 3'- -UCGUGC-GUCCCGUGGa----------GGACgCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 131460 | 0.69 | 0.493242 |
Target: 5'- aGGcCGCGCucucGGCcucgucgGCCUCCUGCGCCg- -3' miRNA: 3'- -UC-GUGCGuc--CCG-------UGGAGGACGCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 157983 | 0.69 | 0.494141 |
Target: 5'- -aCAgGCuuGGGCACCUCCaccugUGCcGCCCGg -3' miRNA: 3'- ucGUgCGu-CCCGUGGAGG-----ACG-CGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 183714 | 0.69 | 0.494141 |
Target: 5'- gAGCugGCcggcugcuGGGGCcucuacccgGCCaUCCUGUGCCUg -3' miRNA: 3'- -UCGugCG--------UCCCG---------UGG-AGGACGCGGGu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 15125 | 0.69 | 0.494141 |
Target: 5'- cGCACG-AGGGCGCCUgggaGCGCCUg -3' miRNA: 3'- uCGUGCgUCCCGUGGAgga-CGCGGGu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 178588 | 0.69 | 0.494141 |
Target: 5'- cGCGCGUccagccGGGCGcCCUCCUgcagcacgGCGUCCAa -3' miRNA: 3'- uCGUGCGu-----CCCGU-GGAGGA--------CGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 201386 | 0.69 | 0.503176 |
Target: 5'- cGGCGCcgggcucggccgGCAGcGGCAUUUUCUcgGCGCCCAa -3' miRNA: 3'- -UCGUG------------CGUC-CCGUGGAGGA--CGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 55728 | 0.69 | 0.503176 |
Target: 5'- cGGCGCGCA--GCGCCUCCcaGCGCgCGg -3' miRNA: 3'- -UCGUGCGUccCGUGGAGGa-CGCGgGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 176141 | 0.69 | 0.503176 |
Target: 5'- cGCGCGCAGGuucucCAUCUCCUcggaGCCCGg -3' miRNA: 3'- uCGUGCGUCCc----GUGGAGGAcg--CGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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