Results 61 - 80 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14617 | 5' | -63.3 | NC_003521.1 | + | 88548 | 0.69 | 0.511369 |
Target: 5'- cGGCcuccucgGgGCAGGGCACCagCUG-GCCCGc -3' miRNA: 3'- -UCG-------UgCGUCCCGUGGagGACgCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 148517 | 0.69 | 0.512282 |
Target: 5'- uGC-CGCGGcuGCGCCUCCUcccGCGCCUu -3' miRNA: 3'- uCGuGCGUCc-CGUGGAGGA---CGCGGGu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 144171 | 0.69 | 0.512282 |
Target: 5'- aAGCACGCc-GGCGCCgCCUGcCGCgCGc -3' miRNA: 3'- -UCGUGCGucCCGUGGaGGAC-GCGgGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 85397 | 0.69 | 0.512282 |
Target: 5'- cGGCuGCGCuuGGCcggcagcagGCCUCCgGUGCCCAg -3' miRNA: 3'- -UCG-UGCGucCCG---------UGGAGGaCGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 166643 | 0.68 | 0.521455 |
Target: 5'- cGCGCGCcGGGCGCCgcggCgCaGCGgCCAg -3' miRNA: 3'- uCGUGCGuCCCGUGGa---G-GaCGCgGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 165656 | 0.68 | 0.521455 |
Target: 5'- cAGCACGCcgcGcGGCACCa--UGCGUCCAg -3' miRNA: 3'- -UCGUGCGu--C-CCGUGGaggACGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 14229 | 0.68 | 0.521455 |
Target: 5'- cGC-CGCuGGGCuacGCCgugaUCCUGCuGCCCGa -3' miRNA: 3'- uCGuGCGuCCCG---UGG----AGGACG-CGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 40236 | 0.68 | 0.530692 |
Target: 5'- cAGCGguCGCAGGcGcCGCCUCCgGCaGCUCAc -3' miRNA: 3'- -UCGU--GCGUCC-C-GUGGAGGaCG-CGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 175587 | 0.68 | 0.530692 |
Target: 5'- cGCGCGCGGauccaggccGGCcaguAUCUCCUGCGUCUc -3' miRNA: 3'- uCGUGCGUC---------CCG----UGGAGGACGCGGGu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 240464 | 0.68 | 0.530692 |
Target: 5'- cAGCGguCGCAGGcGcCGCCUCCgGCaGCUCAc -3' miRNA: 3'- -UCGU--GCGUCC-C-GUGGAGGaCG-CGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 91111 | 0.68 | 0.534403 |
Target: 5'- gGGCACGCcgagcgagagcucacAGGGCuccACCUCCaGCuucccggcgggGCCCAc -3' miRNA: 3'- -UCGUGCG---------------UCCCG---UGGAGGaCG-----------CGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 37486 | 0.68 | 0.539987 |
Target: 5'- uGC-CGCAGGGCACCcCCauCGCCa- -3' miRNA: 3'- uCGuGCGUCCCGUGGaGGacGCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 196410 | 0.68 | 0.539987 |
Target: 5'- gGGCGgGCAGcGGCACagacagUCgCUGuCGCCCGg -3' miRNA: 3'- -UCGUgCGUC-CCGUGg-----AG-GAC-GCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 18570 | 0.68 | 0.539987 |
Target: 5'- cGCGCGCAGcuggagagcGCGCUcgacugguUCCUGCGgCCCAg -3' miRNA: 3'- uCGUGCGUCc--------CGUGG--------AGGACGC-GGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 157054 | 0.68 | 0.539987 |
Target: 5'- gAGCGCgGCggGGGGCGCCgccacCCUGU-CCCAg -3' miRNA: 3'- -UCGUG-CG--UCCCGUGGa----GGACGcGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 20646 | 0.68 | 0.539987 |
Target: 5'- cGCGCGCugguGGGCGCCUacgugaugaCCgugGCGCUg- -3' miRNA: 3'- uCGUGCGu---CCCGUGGA---------GGa--CGCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 95080 | 0.68 | 0.5484 |
Target: 5'- uAGuCGCGCAggggcucGGGCGCCUUgaGCGgCCGc -3' miRNA: 3'- -UC-GUGCGU-------CCCGUGGAGgaCGCgGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 148711 | 0.68 | 0.549337 |
Target: 5'- cAGCugGUAcGGCauccucgagGCCUCC-GUGCCCAu -3' miRNA: 3'- -UCGugCGUcCCG---------UGGAGGaCGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 127640 | 0.68 | 0.549337 |
Target: 5'- uGCACGaagacGGGCACCUC--GCGgCCCAu -3' miRNA: 3'- uCGUGCgu---CCCGUGGAGgaCGC-GGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 137088 | 0.68 | 0.549337 |
Target: 5'- -cCACGCGGcggugcugcGGCACCugaaccugguuuUCCUGUGCCCc -3' miRNA: 3'- ucGUGCGUC---------CCGUGG------------AGGACGCGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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