miRNA display CGI


Results 81 - 100 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 137088 0.68 0.549337
Target:  5'- -cCACGCGGcggugcugcGGCACCugaaccugguuuUCCUGUGCCCc -3'
miRNA:   3'- ucGUGCGUC---------CCGUGG------------AGGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 216363 0.68 0.557794
Target:  5'- cGCugGCcaggcagagcagaAGGGCuGCCUCggGCGUCCAc -3'
miRNA:   3'- uCGugCG-------------UCCCG-UGGAGgaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 219146 0.68 0.558736
Target:  5'- gAGaCAgGCAGGGUACCagCagGCGCCgCAg -3'
miRNA:   3'- -UC-GUgCGUCCCGUGGagGa-CGCGG-GU- -5'
14617 5' -63.3 NC_003521.1 + 164564 0.68 0.558736
Target:  5'- cGCAgGCGGccguGCGCCUCUcGCGCCUc -3'
miRNA:   3'- uCGUgCGUCc---CGUGGAGGaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 73148 0.68 0.568181
Target:  5'- cAGCG-GCGGcGGCGCCgccucggCCUGCGaCCUg -3'
miRNA:   3'- -UCGUgCGUC-CCGUGGa------GGACGC-GGGu -5'
14617 5' -63.3 NC_003521.1 + 120076 0.68 0.568181
Target:  5'- cGGCAUcCAGGcGCGCCaCCUgGUGCCCc -3'
miRNA:   3'- -UCGUGcGUCC-CGUGGaGGA-CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 98421 0.67 0.576714
Target:  5'- cGUugGcCAGGGCggccagggccgcgGCCUCCUGgGCUa- -3'
miRNA:   3'- uCGugC-GUCCCG-------------UGGAGGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 145427 0.67 0.576714
Target:  5'- gGGCuuGCuGGGCGCCUcgguggaCCUGUGCUUc -3'
miRNA:   3'- -UCGugCGuCCCGUGGA-------GGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 116874 0.67 0.577664
Target:  5'- cGCGCGCAGuGGCGCggCUgcggcgGCGCgCCGg -3'
miRNA:   3'- uCGUGCGUC-CCGUGgaGGa-----CGCG-GGU- -5'
14617 5' -63.3 NC_003521.1 + 224527 0.67 0.577664
Target:  5'- aAGC-CGCcGGGCcgguaggcACC-CCgGCGCCCAg -3'
miRNA:   3'- -UCGuGCGuCCCG--------UGGaGGaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 173537 0.67 0.577664
Target:  5'- gGGCgucagGCGCAGcGGCuguCCUCCcUGCccGCCCu -3'
miRNA:   3'- -UCG-----UGCGUC-CCGu--GGAGG-ACG--CGGGu -5'
14617 5' -63.3 NC_003521.1 + 148722 0.67 0.577664
Target:  5'- gGGUuccgACcCGGGGCACCgcCCUGCGCaCCc -3'
miRNA:   3'- -UCG----UGcGUCCCGUGGa-GGACGCG-GGu -5'
14617 5' -63.3 NC_003521.1 + 74845 0.67 0.577664
Target:  5'- gAGCGCGacuGGGuGCGCUUCCUcaGCcuGCCCGa -3'
miRNA:   3'- -UCGUGCg--UCC-CGUGGAGGA--CG--CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 154006 0.67 0.584323
Target:  5'- cAGCACGCAcGGGUcgcgcagcACCUggugcaugcucuugCCgcggcagGCGCCCAu -3'
miRNA:   3'- -UCGUGCGU-CCCG--------UGGA--------------GGa------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 46518 0.67 0.587182
Target:  5'- uGCugGCAcacGGGCGucuUCUCCagGCGCaCCAg -3'
miRNA:   3'- uCGugCGU---CCCGU---GGAGGa-CGCG-GGU- -5'
14617 5' -63.3 NC_003521.1 + 18170 0.67 0.587182
Target:  5'- gGGCAgCGUGGaGGCGCUgcgcgCCUGCcgGCCCu -3'
miRNA:   3'- -UCGU-GCGUC-CCGUGGa----GGACG--CGGGu -5'
14617 5' -63.3 NC_003521.1 + 129020 0.67 0.590997
Target:  5'- uGGCGcCGCcagAGGGCACCcgcagaaacucaaagUCCacgaggGCGCCCu -3'
miRNA:   3'- -UCGU-GCG---UCCCGUGG---------------AGGa-----CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 113024 0.67 0.596729
Target:  5'- cGGCACGUgcuGGuGCGCCUCUUucacaaacGCGCCg- -3'
miRNA:   3'- -UCGUGCGu--CC-CGUGGAGGA--------CGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 168939 0.67 0.596729
Target:  5'- cGCAgGCAGGGcCGCCg-CUGuCGCCg- -3'
miRNA:   3'- uCGUgCGUCCC-GUGGagGAC-GCGGgu -5'
14617 5' -63.3 NC_003521.1 + 68156 0.67 0.596729
Target:  5'- --gGCGCAGGuGCugCgUCUGCGCCa- -3'
miRNA:   3'- ucgUGCGUCC-CGugGaGGACGCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.