miRNA display CGI


Results 41 - 60 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 88548 0.69 0.511369
Target:  5'- cGGCcuccucgGgGCAGGGCACCagCUG-GCCCGc -3'
miRNA:   3'- -UCG-------UgCGUCCCGUGGagGACgCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 91111 0.68 0.534403
Target:  5'- gGGCACGCcgagcgagagcucacAGGGCuccACCUCCaGCuucccggcgggGCCCAc -3'
miRNA:   3'- -UCGUGCG---------------UCCCG---UGGAGGaCG-----------CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 91182 0.66 0.663849
Target:  5'- cGCAC-CAGGagaGCACCUcgCCggcgGCGUCCAg -3'
miRNA:   3'- uCGUGcGUCC---CGUGGA--GGa---CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 95080 0.68 0.5484
Target:  5'- uAGuCGCGCAggggcucGGGCGCCUUgaGCGgCCGc -3'
miRNA:   3'- -UC-GUGCGU-------CCCGUGGAGgaCGCgGGU- -5'
14617 5' -63.3 NC_003521.1 + 95168 0.69 0.458783
Target:  5'- cGCGgGCcgAGGGCACCUC--GCGCUCGg -3'
miRNA:   3'- uCGUgCG--UCCCGUGGAGgaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 95275 0.66 0.692411
Target:  5'- uGCACGaAGGGguCCUCCuucuUGCGCa-- -3'
miRNA:   3'- uCGUGCgUCCCguGGAGG----ACGCGggu -5'
14617 5' -63.3 NC_003521.1 + 95335 0.74 0.244654
Target:  5'- cGCGCGCAGGGCuCCaCCUGCagcgugcgaguGCCCc -3'
miRNA:   3'- uCGUGCGUCCCGuGGaGGACG-----------CGGGu -5'
14617 5' -63.3 NC_003521.1 + 95549 0.66 0.682925
Target:  5'- cGGCGCGCGagcuGGcCGCCgaggCCgaggagGCGCCCu -3'
miRNA:   3'- -UCGUGCGUc---CC-GUGGa---GGa-----CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 98421 0.67 0.576714
Target:  5'- cGUugGcCAGGGCggccagggccgcgGCCUCCUGgGCUa- -3'
miRNA:   3'- uCGugC-GUCCCG-------------UGGAGGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 99330 0.73 0.298739
Target:  5'- aGGCGgGCcagguGGGCACCUC--GCGCCCGg -3'
miRNA:   3'- -UCGUgCGu----CCCGUGGAGgaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 99946 0.67 0.596729
Target:  5'- cGCACGCAGGGgGgCggCgGCGCCUc -3'
miRNA:   3'- uCGUGCGUCCCgUgGagGaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 100998 0.66 0.681974
Target:  5'- cGCuCGCugagggaggacaGGGGCGCgUCCUGgcgggcaCGCCCGu -3'
miRNA:   3'- uCGuGCG------------UCCCGUGgAGGAC-------GCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 101140 0.7 0.423989
Target:  5'- gGGCACGCGGaaagcgcGGCGCggUCUGCGUCCc -3'
miRNA:   3'- -UCGUGCGUC-------CCGUGgaGGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 102017 0.73 0.273628
Target:  5'- aGGCGCGCcauggAGGGCAUCUCCUGgcgguUGCCgCAc -3'
miRNA:   3'- -UCGUGCG-----UCCCGUGGAGGAC-----GCGG-GU- -5'
14617 5' -63.3 NC_003521.1 + 102332 0.66 0.669584
Target:  5'- cGUGCGCGuGGGCGCCgacgCCgggguggcggcagGCGCUCu -3'
miRNA:   3'- uCGUGCGU-CCCGUGGa---GGa------------CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 102843 0.69 0.485181
Target:  5'- aAGCGCGcCAGGGCGCCcguggcguaggUCUGgGCCg- -3'
miRNA:   3'- -UCGUGC-GUCCCGUGGa----------GGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 106717 0.7 0.416564
Target:  5'- aGGCGCGCAGgacggccaccaGGUccuggauggacACCUCCgcguccaggGCGCCCAg -3'
miRNA:   3'- -UCGUGCGUC-----------CCG-----------UGGAGGa--------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 110466 0.7 0.450154
Target:  5'- gAGCGCGCAcGGCGCCUgCgGCcgcacguugaGCCCGa -3'
miRNA:   3'- -UCGUGCGUcCCGUGGAgGaCG----------CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 112364 0.66 0.654274
Target:  5'- cGCACGCGGcGGCugCggcgUCU-CGUCCAc -3'
miRNA:   3'- uCGUGCGUC-CCGugGa---GGAcGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 113024 0.67 0.596729
Target:  5'- cGGCACGUgcuGGuGCGCCUCUUucacaaacGCGCCg- -3'
miRNA:   3'- -UCGUGCGu--CC-CGUGGAGGA--------CGCGGgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.