miRNA display CGI


Results 61 - 80 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 116874 0.67 0.577664
Target:  5'- cGCGCGCAGuGGCGCggCUgcggcgGCGCgCCGg -3'
miRNA:   3'- uCGUGCGUC-CCGUGgaGGa-----CGCG-GGU- -5'
14617 5' -63.3 NC_003521.1 + 120076 0.68 0.568181
Target:  5'- cGGCAUcCAGGcGCGCCaCCUgGUGCCCc -3'
miRNA:   3'- -UCGUGcGUCC-CGUGGaGGA-CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 120631 0.72 0.35421
Target:  5'- cAGCGgGCAGGGCACC-CacaCGCCCu -3'
miRNA:   3'- -UCGUgCGUCCCGUGGaGgacGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 121946 0.66 0.654274
Target:  5'- cGuCACGUucuGCACCUCCU-CGCCCGu -3'
miRNA:   3'- uC-GUGCGuccCGUGGAGGAcGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 122643 0.67 0.613007
Target:  5'- cAGC-CGCAuGGGCAgCaggUCCUggagcgcgaucgagGCGCCCAg -3'
miRNA:   3'- -UCGuGCGU-CCCGUgG---AGGA--------------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 127640 0.68 0.549337
Target:  5'- uGCACGaagacGGGCACCUC--GCGgCCCAu -3'
miRNA:   3'- uCGUGCgu---CCCGUGGAGgaCGC-GGGU- -5'
14617 5' -63.3 NC_003521.1 + 129020 0.67 0.590997
Target:  5'- uGGCGcCGCcagAGGGCACCcgcagaaacucaaagUCCacgaggGCGCCCu -3'
miRNA:   3'- -UCGU-GCG---UCCCGUGG---------------AGGa-----CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 129558 0.66 0.644683
Target:  5'- uGGCACgGCGGGcccgacgaugGCugCUCCgccGCGCCg- -3'
miRNA:   3'- -UCGUG-CGUCC----------CGugGAGGa--CGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 130164 0.67 0.606298
Target:  5'- cGCugGCcgaccGGGCcgugACCgugCCgGCGCCCGg -3'
miRNA:   3'- uCGugCGu----CCCG----UGGa--GGaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 130633 0.7 0.424819
Target:  5'- cGCACGcCAGcGGCcuccaccccaACCUCCUGUGCUa- -3'
miRNA:   3'- uCGUGC-GUC-CCG----------UGGAGGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 131460 0.69 0.493242
Target:  5'- aGGcCGCGCucucGGCcucgucgGCCUCCUGCGCCg- -3'
miRNA:   3'- -UC-GUGCGuc--CCG-------UGGAGGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 135018 0.7 0.450154
Target:  5'- uGGC-UGCcGGGCACCguggCCUGCGUCaCGg -3'
miRNA:   3'- -UCGuGCGuCCCGUGGa---GGACGCGG-GU- -5'
14617 5' -63.3 NC_003521.1 + 137088 0.68 0.549337
Target:  5'- -cCACGCGGcggugcugcGGCACCugaaccugguuuUCCUGUGCCCc -3'
miRNA:   3'- ucGUGCGUC---------CCGUGG------------AGGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 138821 0.66 0.692411
Target:  5'- uGGCGCGCcugauGGcGGCGgCUacggCCUGCGgCCAg -3'
miRNA:   3'- -UCGUGCG-----UC-CCGUgGA----GGACGCgGGU- -5'
14617 5' -63.3 NC_003521.1 + 138837 0.66 0.682925
Target:  5'- uGGaCACGCAGcuGCACCgCCUGCuggacCCCAu -3'
miRNA:   3'- -UC-GUGCGUCc-CGUGGaGGACGc----GGGU- -5'
14617 5' -63.3 NC_003521.1 + 139418 0.69 0.476299
Target:  5'- cAGC-CGCAcGGGC-UCUCCUGCGUggCCGu -3'
miRNA:   3'- -UCGuGCGU-CCCGuGGAGGACGCG--GGU- -5'
14617 5' -63.3 NC_003521.1 + 141080 0.66 0.686724
Target:  5'- uGCgACGUGGaGGC-CCUCCUGUggcugcucuacugcgGCCCGc -3'
miRNA:   3'- uCG-UGCGUC-CCGuGGAGGACG---------------CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 144171 0.69 0.512282
Target:  5'- aAGCACGCc-GGCGCCgCCUGcCGCgCGc -3'
miRNA:   3'- -UCGUGCGucCCGUGGaGGAC-GCGgGU- -5'
14617 5' -63.3 NC_003521.1 + 145173 0.7 0.424819
Target:  5'- cAGuCGCGCAacuccgucuGGCACCUgCUGCGCCUc -3'
miRNA:   3'- -UC-GUGCGUc--------CCGUGGAgGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 145254 0.76 0.181143
Target:  5'- uGCcUGCAGGGCGCCUCCUcggccucgGCGgCCAg -3'
miRNA:   3'- uCGuGCGUCCCGUGGAGGA--------CGCgGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.