miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 197682 0.68 0.549337
Target:  5'- cAGCGCGU---GCACCUCCa-CGCCCAg -3'
miRNA:   3'- -UCGUGCGuccCGUGGAGGacGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 196410 0.68 0.539987
Target:  5'- gGGCGgGCAGcGGCACagacagUCgCUGuCGCCCGg -3'
miRNA:   3'- -UCGUgCGUC-CCGUGg-----AG-GAC-GCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 190351 0.66 0.691465
Target:  5'- uGGCACGCGccGGGCAgcaucuccgucuCCUCCgacGUcgauacaGCCCAc -3'
miRNA:   3'- -UCGUGCGU--CCCGU------------GGAGGa--CG-------CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 183714 0.69 0.494141
Target:  5'- gAGCugGCcggcugcuGGGGCcucuacccgGCCaUCCUGUGCCUg -3'
miRNA:   3'- -UCGugCG--------UCCCG---------UGG-AGGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 183228 0.72 0.346893
Target:  5'- cGGCACGCugacucGGGGUucGCCgCCgGCGCCCu -3'
miRNA:   3'- -UCGUGCG------UCCCG--UGGaGGaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 178588 0.69 0.494141
Target:  5'- cGCGCGUccagccGGGCGcCCUCCUgcagcacgGCGUCCAa -3'
miRNA:   3'- uCGUGCGu-----CCCGU-GGAGGA--------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 176456 0.72 0.332587
Target:  5'- cGCcCGCAccucGGGCAUgUCCaggGCGCCCAg -3'
miRNA:   3'- uCGuGCGU----CCCGUGgAGGa--CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 176141 0.69 0.503176
Target:  5'- cGCGCGCAGGuucucCAUCUCCUcggaGCCCGg -3'
miRNA:   3'- uCGUGCGUCCc----GUGGAGGAcg--CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 175587 0.68 0.530692
Target:  5'- cGCGCGCGGauccaggccGGCcaguAUCUCCUGCGUCUc -3'
miRNA:   3'- uCGUGCGUC---------CCG----UGGAGGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 174774 0.72 0.349807
Target:  5'- cGGCAUGguGGGUACCgucuugcccagcauuUCUgucaGCGCCCAc -3'
miRNA:   3'- -UCGUGCguCCCGUGG---------------AGGa---CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 173537 0.67 0.577664
Target:  5'- gGGCgucagGCGCAGcGGCuguCCUCCcUGCccGCCCu -3'
miRNA:   3'- -UCG-----UGCGUC-CCGu--GGAGG-ACG--CGGGu -5'
14617 5' -63.3 NC_003521.1 + 170536 0.66 0.654274
Target:  5'- uGCAcCGCuuucucuucGGCGCCgaCCUGCGCCUg -3'
miRNA:   3'- uCGU-GCGuc-------CCGUGGa-GGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 168939 0.67 0.596729
Target:  5'- cGCAgGCAGGGcCGCCg-CUGuCGCCg- -3'
miRNA:   3'- uCGUgCGUCCC-GUGGagGAC-GCGGgu -5'
14617 5' -63.3 NC_003521.1 + 167604 0.75 0.208421
Target:  5'- cGGCGCGCAGaGGCGCCgcagGCGCUCGg -3'
miRNA:   3'- -UCGUGCGUC-CCGUGGaggaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 167400 0.71 0.400353
Target:  5'- gGGCACGCuagugGGGGCGCUUCggCUGCuGUCCu -3'
miRNA:   3'- -UCGUGCG-----UCCCGUGGAG--GACG-CGGGu -5'
14617 5' -63.3 NC_003521.1 + 167216 0.73 0.273023
Target:  5'- aGGCGCGCcgcaucuugguguAGGGCGCCaggUCCUcguucaugaccaGCGCCCGc -3'
miRNA:   3'- -UCGUGCG-------------UCCCGUGG---AGGA------------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 167148 0.7 0.441616
Target:  5'- gAGCAgCGCcuuGGGCGCCUCggGCGUCUu -3'
miRNA:   3'- -UCGU-GCGu--CCCGUGGAGgaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 166643 0.68 0.521455
Target:  5'- cGCGCGCcGGGCGCCgcggCgCaGCGgCCAg -3'
miRNA:   3'- uCGUGCGuCCCGUGGa---G-GaCGCgGGU- -5'
14617 5' -63.3 NC_003521.1 + 165656 0.68 0.521455
Target:  5'- cAGCACGCcgcGcGGCACCa--UGCGUCCAg -3'
miRNA:   3'- -UCGUGCGu--C-CCGUGGaggACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 164654 0.66 0.654274
Target:  5'- -uCACGCAGGcccgcgaCACCUguaCCUGCGCCg- -3'
miRNA:   3'- ucGUGCGUCCc------GUGGA---GGACGCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.