miRNA display CGI


Results 41 - 60 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 164564 0.68 0.558736
Target:  5'- cGCAgGCGGccguGCGCCUCUcGCGCCUc -3'
miRNA:   3'- uCGUgCGUCc---CGUGGAGGaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 162884 0.7 0.43317
Target:  5'- cGCGCGCAGGuGgGCCgcuacugCCUGCaggacGCCCu -3'
miRNA:   3'- uCGUGCGUCC-CgUGGa------GGACG-----CGGGu -5'
14617 5' -63.3 NC_003521.1 + 157983 0.69 0.494141
Target:  5'- -aCAgGCuuGGGCACCUCCaccugUGCcGCCCGg -3'
miRNA:   3'- ucGUgCGu-CCCGUGGAGG-----ACG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 157054 0.68 0.539987
Target:  5'- gAGCGCgGCggGGGGCGCCgccacCCUGU-CCCAg -3'
miRNA:   3'- -UCGUG-CG--UCCCGUGGa----GGACGcGGGU- -5'
14617 5' -63.3 NC_003521.1 + 155407 0.67 0.615884
Target:  5'- cGGgGgGCuGGGCACCggaggCCUGCuGCCg- -3'
miRNA:   3'- -UCgUgCGuCCCGUGGa----GGACG-CGGgu -5'
14617 5' -63.3 NC_003521.1 + 154463 0.66 0.673402
Target:  5'- cGCACGCuGuuggucaccGGCACCgCCgGCGCCg- -3'
miRNA:   3'- uCGUGCGuC---------CCGUGGaGGaCGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 154006 0.67 0.584323
Target:  5'- cAGCACGCAcGGGUcgcgcagcACCUggugcaugcucuugCCgcggcagGCGCCCAu -3'
miRNA:   3'- -UCGUGCGU-CCCG--------UGGA--------------GGa------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 153605 0.7 0.441616
Target:  5'- cAGCGC-CAGGuuggcgcucaGCAgCUCCUGCGCCa- -3'
miRNA:   3'- -UCGUGcGUCC----------CGUgGAGGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 153496 0.71 0.392401
Target:  5'- uGcCGCGCAGcuGCGCCUCCagGCGCUCGc -3'
miRNA:   3'- uC-GUGCGUCc-CGUGGAGGa-CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 152762 0.82 0.078984
Target:  5'- cAGCGCGCGGaacGGCgucGCCUCCUGCGCCUu -3'
miRNA:   3'- -UCGUGCGUC---CCG---UGGAGGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 150444 0.72 0.342555
Target:  5'- gAGCGCGCccGGGguCCUCCUggucuggggcggcgaGCGCCUg -3'
miRNA:   3'- -UCGUGCGu-CCCguGGAGGA---------------CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 149346 0.7 0.441616
Target:  5'- aGGUGCGCGaGGUcuGCUUCCUGCGCaCCu -3'
miRNA:   3'- -UCGUGCGUcCCG--UGGAGGACGCG-GGu -5'
14617 5' -63.3 NC_003521.1 + 148722 0.67 0.577664
Target:  5'- gGGUuccgACcCGGGGCACCgcCCUGCGCaCCc -3'
miRNA:   3'- -UCG----UGcGUCCCGUGGa-GGACGCG-GGu -5'
14617 5' -63.3 NC_003521.1 + 148711 0.68 0.549337
Target:  5'- cAGCugGUAcGGCauccucgagGCCUCC-GUGCCCAu -3'
miRNA:   3'- -UCGugCGUcCCG---------UGGAGGaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 148517 0.69 0.512282
Target:  5'- uGC-CGCGGcuGCGCCUCCUcccGCGCCUu -3'
miRNA:   3'- uCGuGCGUCc-CGUGGAGGA---CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 145724 0.69 0.476299
Target:  5'- aAGCGCGCGcGGC-CgCUCaagGCGCCCGa -3'
miRNA:   3'- -UCGUGCGUcCCGuG-GAGga-CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 145427 0.67 0.576714
Target:  5'- gGGCuuGCuGGGCGCCUcgguggaCCUGUGCUUc -3'
miRNA:   3'- -UCGugCGuCCCGUGGA-------GGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 145254 0.76 0.181143
Target:  5'- uGCcUGCAGGGCGCCUCCUcggccucgGCGgCCAg -3'
miRNA:   3'- uCGuGCGUCCCGUGGAGGA--------CGCgGGU- -5'
14617 5' -63.3 NC_003521.1 + 145173 0.7 0.424819
Target:  5'- cAGuCGCGCAacuccgucuGGCACCUgCUGCGCCUc -3'
miRNA:   3'- -UC-GUGCGUc--------CCGUGGAgGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 144171 0.69 0.512282
Target:  5'- aAGCACGCc-GGCGCCgCCUGcCGCgCGc -3'
miRNA:   3'- -UCGUGCGucCCGUGGaGGAC-GCGgGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.