Results 61 - 80 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14617 | 5' | -63.3 | NC_003521.1 | + | 141080 | 0.66 | 0.686724 |
Target: 5'- uGCgACGUGGaGGC-CCUCCUGUggcugcucuacugcgGCCCGc -3' miRNA: 3'- uCG-UGCGUC-CCGuGGAGGACG---------------CGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 139418 | 0.69 | 0.476299 |
Target: 5'- cAGC-CGCAcGGGC-UCUCCUGCGUggCCGu -3' miRNA: 3'- -UCGuGCGU-CCCGuGGAGGACGCG--GGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 138837 | 0.66 | 0.682925 |
Target: 5'- uGGaCACGCAGcuGCACCgCCUGCuggacCCCAu -3' miRNA: 3'- -UC-GUGCGUCc-CGUGGaGGACGc----GGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 138821 | 0.66 | 0.692411 |
Target: 5'- uGGCGCGCcugauGGcGGCGgCUacggCCUGCGgCCAg -3' miRNA: 3'- -UCGUGCG-----UC-CCGUgGA----GGACGCgGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 137088 | 0.68 | 0.549337 |
Target: 5'- -cCACGCGGcggugcugcGGCACCugaaccugguuuUCCUGUGCCCc -3' miRNA: 3'- ucGUGCGUC---------CCGUGG------------AGGACGCGGGu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 135018 | 0.7 | 0.450154 |
Target: 5'- uGGC-UGCcGGGCACCguggCCUGCGUCaCGg -3' miRNA: 3'- -UCGuGCGuCCCGUGGa---GGACGCGG-GU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 131460 | 0.69 | 0.493242 |
Target: 5'- aGGcCGCGCucucGGCcucgucgGCCUCCUGCGCCg- -3' miRNA: 3'- -UC-GUGCGuc--CCG-------UGGAGGACGCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 130633 | 0.7 | 0.424819 |
Target: 5'- cGCACGcCAGcGGCcuccaccccaACCUCCUGUGCUa- -3' miRNA: 3'- uCGUGC-GUC-CCG----------UGGAGGACGCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 130164 | 0.67 | 0.606298 |
Target: 5'- cGCugGCcgaccGGGCcgugACCgugCCgGCGCCCGg -3' miRNA: 3'- uCGugCGu----CCCG----UGGa--GGaCGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 129558 | 0.66 | 0.644683 |
Target: 5'- uGGCACgGCGGGcccgacgaugGCugCUCCgccGCGCCg- -3' miRNA: 3'- -UCGUG-CGUCC----------CGugGAGGa--CGCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 129020 | 0.67 | 0.590997 |
Target: 5'- uGGCGcCGCcagAGGGCACCcgcagaaacucaaagUCCacgaggGCGCCCu -3' miRNA: 3'- -UCGU-GCG---UCCCGUGG---------------AGGa-----CGCGGGu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 127640 | 0.68 | 0.549337 |
Target: 5'- uGCACGaagacGGGCACCUC--GCGgCCCAu -3' miRNA: 3'- uCGUGCgu---CCCGUGGAGgaCGC-GGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 122643 | 0.67 | 0.613007 |
Target: 5'- cAGC-CGCAuGGGCAgCaggUCCUggagcgcgaucgagGCGCCCAg -3' miRNA: 3'- -UCGuGCGU-CCCGUgG---AGGA--------------CGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 121946 | 0.66 | 0.654274 |
Target: 5'- cGuCACGUucuGCACCUCCU-CGCCCGu -3' miRNA: 3'- uC-GUGCGuccCGUGGAGGAcGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 120631 | 0.72 | 0.35421 |
Target: 5'- cAGCGgGCAGGGCACC-CacaCGCCCu -3' miRNA: 3'- -UCGUgCGUCCCGUGGaGgacGCGGGu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 120076 | 0.68 | 0.568181 |
Target: 5'- cGGCAUcCAGGcGCGCCaCCUgGUGCCCc -3' miRNA: 3'- -UCGUGcGUCC-CGUGGaGGA-CGCGGGu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 116874 | 0.67 | 0.577664 |
Target: 5'- cGCGCGCAGuGGCGCggCUgcggcgGCGCgCCGg -3' miRNA: 3'- uCGUGCGUC-CCGUGgaGGa-----CGCG-GGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 113024 | 0.67 | 0.596729 |
Target: 5'- cGGCACGUgcuGGuGCGCCUCUUucacaaacGCGCCg- -3' miRNA: 3'- -UCGUGCGu--CC-CGUGGAGGA--------CGCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 112364 | 0.66 | 0.654274 |
Target: 5'- cGCACGCGGcGGCugCggcgUCU-CGUCCAc -3' miRNA: 3'- uCGUGCGUC-CCGugGa---GGAcGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 110466 | 0.7 | 0.450154 |
Target: 5'- gAGCGCGCAcGGCGCCUgCgGCcgcacguugaGCCCGa -3' miRNA: 3'- -UCGUGCGUcCCGUGGAgGaCG----------CGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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