Results 41 - 60 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14617 | 5' | -63.3 | NC_003521.1 | + | 217234 | 0.72 | 0.332587 |
Target: 5'- gAGgAUGCAGGccaGCACC-CCcGCGCCCAc -3' miRNA: 3'- -UCgUGCGUCC---CGUGGaGGaCGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 222652 | 0.72 | 0.325598 |
Target: 5'- aGGCGCGCA--GCGCCUCCacGCuGCCCAg -3' miRNA: 3'- -UCGUGCGUccCGUGGAGGa-CG-CGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 67275 | 0.73 | 0.305289 |
Target: 5'- gGGCGgGCAGGGaggacaGCCgcugcgCCUGaCGCCCGa -3' miRNA: 3'- -UCGUgCGUCCCg-----UGGa-----GGAC-GCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 145254 | 0.76 | 0.181143 |
Target: 5'- uGCcUGCAGGGCGCCUCCUcggccucgGCGgCCAg -3' miRNA: 3'- uCGuGCGUCCCGUGGAGGA--------CGCgGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 152762 | 0.82 | 0.078984 |
Target: 5'- cAGCGCGCGGaacGGCgucGCCUCCUGCGCCUu -3' miRNA: 3'- -UCGUGCGUC---CCG---UGGAGGACGCGGGu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 212654 | 0.7 | 0.408409 |
Target: 5'- gAGCAUGCAGGGUAUCagCaUGC-CCCAg -3' miRNA: 3'- -UCGUGCGUCCCGUGGagG-ACGcGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 201275 | 0.7 | 0.416564 |
Target: 5'- uGGCcgGCGuCGGGGcCACCgaCCUGCGCCa- -3' miRNA: 3'- -UCG--UGC-GUCCC-GUGGa-GGACGCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 131460 | 0.69 | 0.493242 |
Target: 5'- aGGcCGCGCucucGGCcucgucgGCCUCCUGCGCCg- -3' miRNA: 3'- -UC-GUGCGuc--CCG-------UGGAGGACGCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 102843 | 0.69 | 0.485181 |
Target: 5'- aAGCGCGcCAGGGCGCCcguggcguaggUCUGgGCCg- -3' miRNA: 3'- -UCGUGC-GUCCCGUGGa----------GGACgCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 60152 | 0.69 | 0.485181 |
Target: 5'- gAGCACGCAGGccucGCGCCaacgCCUGgaGCCg- -3' miRNA: 3'- -UCGUGCGUCC----CGUGGa---GGACg-CGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 145724 | 0.69 | 0.476299 |
Target: 5'- aAGCGCGCGcGGC-CgCUCaagGCGCCCGa -3' miRNA: 3'- -UCGUGCGUcCCGuG-GAGga-CGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 74148 | 0.69 | 0.466623 |
Target: 5'- uGGCGCGCcacGGGGCccaggugccgcugGCCgacugcgCCgcgGCGCCCGg -3' miRNA: 3'- -UCGUGCG---UCCCG-------------UGGa------GGa--CGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 240036 | 0.7 | 0.441616 |
Target: 5'- cGGgGCGCcGGGCGguCCUCCgccgaugGCGCCUg -3' miRNA: 3'- -UCgUGCGuCCCGU--GGAGGa------CGCGGGu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 153605 | 0.7 | 0.441616 |
Target: 5'- cAGCGC-CAGGuuggcgcucaGCAgCUCCUGCGCCa- -3' miRNA: 3'- -UCGUGcGUCC----------CGUgGAGGACGCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 149346 | 0.7 | 0.441616 |
Target: 5'- aGGUGCGCGaGGUcuGCUUCCUGCGCaCCu -3' miRNA: 3'- -UCGUGCGUcCCG--UGGAGGACGCG-GGu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 78666 | 0.7 | 0.441616 |
Target: 5'- gGGCuucucgGCGCAGGGgaaGCCgccgUCUGCGCUCAu -3' miRNA: 3'- -UCG------UGCGUCCCg--UGGa---GGACGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 145173 | 0.7 | 0.424819 |
Target: 5'- cAGuCGCGCAacuccgucuGGCACCUgCUGCGCCUc -3' miRNA: 3'- -UC-GUGCGUc--------CCGUGGAgGACGCGGGu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 130633 | 0.7 | 0.424819 |
Target: 5'- cGCACGcCAGcGGCcuccaccccaACCUCCUGUGCUa- -3' miRNA: 3'- uCGUGC-GUC-CCG----------UGGAGGACGCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 74641 | 0.7 | 0.424819 |
Target: 5'- uGGUGCGCGGGacccuggaGCGCCgcucggcCCUGCGCUCGc -3' miRNA: 3'- -UCGUGCGUCC--------CGUGGa------GGACGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 101140 | 0.7 | 0.423989 |
Target: 5'- gGGCACGCGGaaagcgcGGCGCggUCUGCGUCCc -3' miRNA: 3'- -UCGUGCGUC-------CCGUGgaGGACGCGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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