miRNA display CGI


Results 61 - 80 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 131460 0.69 0.493242
Target:  5'- aGGcCGCGCucucGGCcucgucgGCCUCCUGCGCCg- -3'
miRNA:   3'- -UC-GUGCGuc--CCG-------UGGAGGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 102843 0.69 0.485181
Target:  5'- aAGCGCGcCAGGGCGCCcguggcguaggUCUGgGCCg- -3'
miRNA:   3'- -UCGUGC-GUCCCGUGGa----------GGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 60152 0.69 0.485181
Target:  5'- gAGCACGCAGGccucGCGCCaacgCCUGgaGCCg- -3'
miRNA:   3'- -UCGUGCGUCC----CGUGGa---GGACg-CGGgu -5'
14617 5' -63.3 NC_003521.1 + 145173 0.7 0.424819
Target:  5'- cAGuCGCGCAacuccgucuGGCACCUgCUGCGCCUc -3'
miRNA:   3'- -UC-GUGCGUc--------CCGUGGAgGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 78666 0.7 0.441616
Target:  5'- gGGCuucucgGCGCAGGGgaaGCCgccgUCUGCGCUCAu -3'
miRNA:   3'- -UCG------UGCGUCCCg--UGGa---GGACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 149346 0.7 0.441616
Target:  5'- aGGUGCGCGaGGUcuGCUUCCUGCGCaCCu -3'
miRNA:   3'- -UCGUGCGUcCCG--UGGAGGACGCG-GGu -5'
14617 5' -63.3 NC_003521.1 + 153605 0.7 0.441616
Target:  5'- cAGCGC-CAGGuuggcgcucaGCAgCUCCUGCGCCa- -3'
miRNA:   3'- -UCGUGcGUCC----------CGUgGAGGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 240036 0.7 0.441616
Target:  5'- cGGgGCGCcGGGCGguCCUCCgccgaugGCGCCUg -3'
miRNA:   3'- -UCgUGCGuCCCGU--GGAGGa------CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 74148 0.69 0.466623
Target:  5'- uGGCGCGCcacGGGGCccaggugccgcugGCCgacugcgCCgcgGCGCCCGg -3'
miRNA:   3'- -UCGUGCG---UCCCG-------------UGGa------GGa--CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 145724 0.69 0.476299
Target:  5'- aAGCGCGCGcGGC-CgCUCaagGCGCCCGa -3'
miRNA:   3'- -UCGUGCGUcCCGuG-GAGga-CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 183228 0.72 0.346893
Target:  5'- cGGCACGCugacucGGGGUucGCCgCCgGCGCCCu -3'
miRNA:   3'- -UCGUGCG------UCCCG--UGGaGGaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 176456 0.72 0.332587
Target:  5'- cGCcCGCAccucGGGCAUgUCCaggGCGCCCAg -3'
miRNA:   3'- uCGuGCGU----CCCGUGgAGGa--CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 99330 0.73 0.298739
Target:  5'- aGGCGgGCcagguGGGCACCUC--GCGCCCGg -3'
miRNA:   3'- -UCGUgCGu----CCCGUGGAGgaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 102017 0.73 0.273628
Target:  5'- aGGCGCGCcauggAGGGCAUCUCCUGgcgguUGCCgCAc -3'
miRNA:   3'- -UCGUGCG-----UCCCGUGGAGGAC-----GCGG-GU- -5'
14617 5' -63.3 NC_003521.1 + 167216 0.73 0.273023
Target:  5'- aGGCGCGCcgcaucuugguguAGGGCGCCaggUCCUcguucaugaccaGCGCCCGc -3'
miRNA:   3'- -UCGUGCG-------------UCCCGUGG---AGGA------------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 95335 0.74 0.244654
Target:  5'- cGCGCGCAGGGCuCCaCCUGCagcgugcgaguGCCCc -3'
miRNA:   3'- uCGUGCGUCCCGuGGaGGACG-----------CGGGu -5'
14617 5' -63.3 NC_003521.1 + 71883 0.75 0.233797
Target:  5'- cGGCGacaGCGGcGGC-CCUgCCUGCGCCCu -3'
miRNA:   3'- -UCGUg--CGUC-CCGuGGA-GGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 167604 0.75 0.208421
Target:  5'- cGGCGCGCAGaGGCGCCgcagGCGCUCGg -3'
miRNA:   3'- -UCGUGCGUC-CCGUGGaggaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 14951 0.75 0.208421
Target:  5'- cAGaCGCGCAuGGaGCACCgcaCCUGUGCCCGc -3'
miRNA:   3'- -UC-GUGCGU-CC-CGUGGa--GGACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 43377 0.66 0.692411
Target:  5'- gAGCAUGCGcuGGCGCCgCCUG-GCCa- -3'
miRNA:   3'- -UCGUGCGUc-CCGUGGaGGACgCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.