miRNA display CGI


Results 81 - 100 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 178588 0.69 0.494141
Target:  5'- cGCGCGUccagccGGGCGcCCUCCUgcagcacgGCGUCCAa -3'
miRNA:   3'- uCGUGCGu-----CCCGU-GGAGGA--------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 176141 0.69 0.503176
Target:  5'- cGCGCGCAGGuucucCAUCUCCUcggaGCCCGg -3'
miRNA:   3'- uCGUGCGUCCc----GUGGAGGAcg--CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 201386 0.69 0.503176
Target:  5'- cGGCGCcgggcucggccgGCAGcGGCAUUUUCUcgGCGCCCAa -3'
miRNA:   3'- -UCGUG------------CGUC-CCGUGGAGGA--CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 14229 0.68 0.521455
Target:  5'- cGC-CGCuGGGCuacGCCgugaUCCUGCuGCCCGa -3'
miRNA:   3'- uCGuGCGuCCCG---UGG----AGGACG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 205838 0.7 0.43317
Target:  5'- cGCugGCcccGGagACCUUCUGCGCCCGc -3'
miRNA:   3'- uCGugCGuc-CCg-UGGAGGACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 162884 0.7 0.43317
Target:  5'- cGCGCGCAGGuGgGCCgcuacugCCUGCaggacGCCCu -3'
miRNA:   3'- uCGUGCGUCC-CgUGGa------GGACG-----CGGGu -5'
14617 5' -63.3 NC_003521.1 + 106717 0.7 0.416564
Target:  5'- aGGCGCGCAGgacggccaccaGGUccuggauggacACCUCCgcguccaggGCGCCCAg -3'
miRNA:   3'- -UCGUGCGUC-----------CCG-----------UGGAGGa--------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 14951 0.75 0.208421
Target:  5'- cAGaCGCGCAuGGaGCACCgcaCCUGUGCCCGc -3'
miRNA:   3'- -UC-GUGCGU-CC-CGUGGa--GGACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 167604 0.75 0.208421
Target:  5'- cGGCGCGCAGaGGCGCCgcagGCGCUCGg -3'
miRNA:   3'- -UCGUGCGUC-CCGUGGaggaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 71883 0.75 0.233797
Target:  5'- cGGCGacaGCGGcGGC-CCUgCCUGCGCCCu -3'
miRNA:   3'- -UCGUg--CGUC-CCGuGGA-GGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 95335 0.74 0.244654
Target:  5'- cGCGCGCAGGGCuCCaCCUGCagcgugcgaguGCCCc -3'
miRNA:   3'- uCGUGCGUCCCGuGGaGGACG-----------CGGGu -5'
14617 5' -63.3 NC_003521.1 + 167216 0.73 0.273023
Target:  5'- aGGCGCGCcgcaucuugguguAGGGCGCCaggUCCUcguucaugaccaGCGCCCGc -3'
miRNA:   3'- -UCGUGCG-------------UCCCGUGG---AGGA------------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 102017 0.73 0.273628
Target:  5'- aGGCGCGCcauggAGGGCAUCUCCUGgcgguUGCCgCAc -3'
miRNA:   3'- -UCGUGCG-----UCCCGUGGAGGAC-----GCGG-GU- -5'
14617 5' -63.3 NC_003521.1 + 99330 0.73 0.298739
Target:  5'- aGGCGgGCcagguGGGCACCUC--GCGCCCGg -3'
miRNA:   3'- -UCGUgCGu----CCCGUGGAGgaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 176456 0.72 0.332587
Target:  5'- cGCcCGCAccucGGGCAUgUCCaggGCGCCCAg -3'
miRNA:   3'- uCGuGCGU----CCCGUGgAGGa--CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 183228 0.72 0.346893
Target:  5'- cGGCACGCugacucGGGGUucGCCgCCgGCGCCCu -3'
miRNA:   3'- -UCGUGCG------UCCCG--UGGaGGaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 174774 0.72 0.349807
Target:  5'- cGGCAUGguGGGUACCgucuugcccagcauuUCUgucaGCGCCCAc -3'
miRNA:   3'- -UCGUGCguCCCGUGG---------------AGGa---CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 24660 0.71 0.384551
Target:  5'- uGGCGCuGguGGuCACCUUCcugUGCGCCCAg -3'
miRNA:   3'- -UCGUG-CguCCcGUGGAGG---ACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 17659 0.71 0.392401
Target:  5'- cAGCAC-CGGGGCACCacgguggcCCUGCGuaaCCCGg -3'
miRNA:   3'- -UCGUGcGUCCCGUGGa-------GGACGC---GGGU- -5'
14617 5' -63.3 NC_003521.1 + 1047 0.7 0.416564
Target:  5'- uGGCcgGCGuCGGGGcCACCgaCCUGCGCCa- -3'
miRNA:   3'- -UCG--UGC-GUCCC-GUGGa-GGACGCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.