miRNA display CGI


Results 121 - 137 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 205838 0.7 0.43317
Target:  5'- cGCugGCcccGGagACCUUCUGCGCCCGc -3'
miRNA:   3'- uCGugCGuc-CCg-UGGAGGACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 66673 0.7 0.441616
Target:  5'- uGCAUGCGGGucuuugcucaGUACCUCCUGgGCUg- -3'
miRNA:   3'- uCGUGCGUCC----------CGUGGAGGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 166643 0.68 0.521455
Target:  5'- cGCGCGCcGGGCGCCgcggCgCaGCGgCCAg -3'
miRNA:   3'- uCGUGCGuCCCGUGGa---G-GaCGCgGGU- -5'
14617 5' -63.3 NC_003521.1 + 14229 0.68 0.521455
Target:  5'- cGC-CGCuGGGCuacGCCgugaUCCUGCuGCCCGa -3'
miRNA:   3'- uCGuGCGuCCCG---UGG----AGGACG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 201386 0.69 0.503176
Target:  5'- cGGCGCcgggcucggccgGCAGcGGCAUUUUCUcgGCGCCCAa -3'
miRNA:   3'- -UCGUG------------CGUC-CCGUGGAGGA--CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 176141 0.69 0.503176
Target:  5'- cGCGCGCAGGuucucCAUCUCCUcggaGCCCGg -3'
miRNA:   3'- uCGUGCGUCCc----GUGGAGGAcg--CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 178588 0.69 0.494141
Target:  5'- cGCGCGUccagccGGGCGcCCUCCUgcagcacgGCGUCCAa -3'
miRNA:   3'- uCGUGCGu-----CCCGU-GGAGGA--------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 157983 0.69 0.494141
Target:  5'- -aCAgGCuuGGGCACCUCCaccugUGCcGCCCGg -3'
miRNA:   3'- ucGUgCGu-CCCGUGGAGG-----ACG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 183714 0.69 0.494141
Target:  5'- gAGCugGCcggcugcuGGGGCcucuacccgGCCaUCCUGUGCCUg -3'
miRNA:   3'- -UCGugCG--------UCCCG---------UGG-AGGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 15125 0.69 0.494141
Target:  5'- cGCACG-AGGGCGCCUgggaGCGCCUg -3'
miRNA:   3'- uCGUGCgUCCCGUGGAgga-CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 139418 0.69 0.476299
Target:  5'- cAGC-CGCAcGGGC-UCUCCUGCGUggCCGu -3'
miRNA:   3'- -UCGuGCGU-CCCGuGGAGGACGCG--GGU- -5'
14617 5' -63.3 NC_003521.1 + 95168 0.69 0.458783
Target:  5'- cGCGgGCcgAGGGCACCUC--GCGCUCGg -3'
miRNA:   3'- uCGUgCG--UCCCGUGGAGgaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 110466 0.7 0.450154
Target:  5'- gAGCGCGCAcGGCGCCUgCgGCcgcacguugaGCCCGa -3'
miRNA:   3'- -UCGUGCGUcCCGUGGAgGaCG----------CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 135018 0.7 0.450154
Target:  5'- uGGC-UGCcGGGCACCguggCCUGCGUCaCGg -3'
miRNA:   3'- -UCGuGCGuCCCGUGGa---GGACGCGG-GU- -5'
14617 5' -63.3 NC_003521.1 + 39809 0.7 0.441616
Target:  5'- cGGgGCGCcGGGCGguCCUCCgccgaugGCGCCUg -3'
miRNA:   3'- -UCgUGCGuCCCGU--GGAGGa------CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 167148 0.7 0.441616
Target:  5'- gAGCAgCGCcuuGGGCGCCUCggGCGUCUu -3'
miRNA:   3'- -UCGU-GCGu--CCCGUGGAGgaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 23991 0.75 0.20364
Target:  5'- cGC-CGCGGGcuGCgACCUCCUGCGCgCCAu -3'
miRNA:   3'- uCGuGCGUCC--CG-UGGAGGACGCG-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.