miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 175587 0.68 0.530692
Target:  5'- cGCGCGCGGauccaggccGGCcaguAUCUCCUGCGUCUc -3'
miRNA:   3'- uCGUGCGUC---------CCG----UGGAGGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 66673 0.7 0.441616
Target:  5'- uGCAUGCGGGucuuugcucaGUACCUCCUGgGCUg- -3'
miRNA:   3'- uCGUGCGUCC----------CGUGGAGGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 167604 0.75 0.208421
Target:  5'- cGGCGCGCAGaGGCGCCgcagGCGCUCGg -3'
miRNA:   3'- -UCGUGCGUC-CCGUGGaggaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 40236 0.68 0.530692
Target:  5'- cAGCGguCGCAGGcGcCGCCUCCgGCaGCUCAc -3'
miRNA:   3'- -UCGU--GCGUCC-C-GUGGAGGaCG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 14951 0.75 0.208421
Target:  5'- cAGaCGCGCAuGGaGCACCgcaCCUGUGCCCGc -3'
miRNA:   3'- -UC-GUGCGU-CC-CGUGGa--GGACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 25539 0.67 0.625482
Target:  5'- cGCugGCGGuGGCcuGCCUCUgcaucuCGCCCu -3'
miRNA:   3'- uCGugCGUC-CCG--UGGAGGac----GCGGGu -5'
14617 5' -63.3 NC_003521.1 + 95335 0.74 0.244654
Target:  5'- cGCGCGCAGGGCuCCaCCUGCagcgugcgaguGCCCc -3'
miRNA:   3'- uCGUGCGUCCCGuGGaGGACG-----------CGGGu -5'
14617 5' -63.3 NC_003521.1 + 2324 0.67 0.606298
Target:  5'- uGCGCGCcggccuccuGGGGCugCUgacCCUGgGCCg- -3'
miRNA:   3'- uCGUGCG---------UCCCGugGA---GGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 39615 0.67 0.596729
Target:  5'- cGGCccaGCGGGaGCagaccgccgGCCUCUcguUGCGCCCAc -3'
miRNA:   3'- -UCGug-CGUCC-CG---------UGGAGG---ACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 74845 0.67 0.577664
Target:  5'- gAGCGCGacuGGGuGCGCUUCCUcaGCcuGCCCGa -3'
miRNA:   3'- -UCGUGCg--UCC-CGUGGAGGA--CG--CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 164564 0.68 0.558736
Target:  5'- cGCAgGCGGccguGCGCCUCUcGCGCCUc -3'
miRNA:   3'- uCGUgCGUCc---CGUGGAGGaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 95080 0.68 0.5484
Target:  5'- uAGuCGCGCAggggcucGGGCGCCUUgaGCGgCCGc -3'
miRNA:   3'- -UC-GUGCGU-------CCCGUGGAGgaCGCgGGU- -5'
14617 5' -63.3 NC_003521.1 + 18570 0.68 0.539987
Target:  5'- cGCGCGCAGcuggagagcGCGCUcgacugguUCCUGCGgCCCAg -3'
miRNA:   3'- uCGUGCGUCc--------CGUGG--------AGGACGC-GGGU- -5'
14617 5' -63.3 NC_003521.1 + 201386 0.69 0.503176
Target:  5'- cGGCGCcgggcucggccgGCAGcGGCAUUUUCUcgGCGCCCAa -3'
miRNA:   3'- -UCGUG------------CGUC-CCGUGGAGGA--CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 157983 0.69 0.494141
Target:  5'- -aCAgGCuuGGGCACCUCCaccugUGCcGCCCGg -3'
miRNA:   3'- ucGUgCGu-CCCGUGGAGG-----ACG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 95168 0.69 0.458783
Target:  5'- cGCGgGCcgAGGGCACCUC--GCGCUCGg -3'
miRNA:   3'- uCGUgCG--UCCCGUGGAGgaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 39809 0.7 0.441616
Target:  5'- cGGgGCGCcGGGCGguCCUCCgccgaugGCGCCUg -3'
miRNA:   3'- -UCgUGCGuCCCGU--GGAGGa------CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 106717 0.7 0.416564
Target:  5'- aGGCGCGCAGgacggccaccaGGUccuggauggacACCUCCgcguccaggGCGCCCAg -3'
miRNA:   3'- -UCGUGCGUC-----------CCG-----------UGGAGGa--------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 24660 0.71 0.384551
Target:  5'- uGGCGCuGguGGuCACCUUCcugUGCGCCCAg -3'
miRNA:   3'- -UCGUG-CguCCcGUGGAGG---ACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 99330 0.73 0.298739
Target:  5'- aGGCGgGCcagguGGGCACCUC--GCGCCCGg -3'
miRNA:   3'- -UCGUgCGu----CCCGUGGAGgaCGCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.