miRNA display CGI


Results 61 - 80 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 39809 0.7 0.441616
Target:  5'- cGGgGCGCcGGGCGguCCUCCgccgaugGCGCCUg -3'
miRNA:   3'- -UCgUGCGuCCCGU--GGAGGa------CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 139418 0.69 0.476299
Target:  5'- cAGC-CGCAcGGGC-UCUCCUGCGUggCCGu -3'
miRNA:   3'- -UCGuGCGU-CCCGuGGAGGACGCG--GGU- -5'
14617 5' -63.3 NC_003521.1 + 157983 0.69 0.494141
Target:  5'- -aCAgGCuuGGGCACCUCCaccugUGCcGCCCGg -3'
miRNA:   3'- ucGUgCGu-CCCGUGGAGG-----ACG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 14229 0.68 0.521455
Target:  5'- cGC-CGCuGGGCuacGCCgugaUCCUGCuGCCCGa -3'
miRNA:   3'- uCGuGCGuCCCG---UGG----AGGACG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 2324 0.67 0.606298
Target:  5'- uGCGCGCcggccuccuGGGGCugCUgacCCUGgGCCg- -3'
miRNA:   3'- uCGUGCG---------UCCCGugGA---GGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 173537 0.67 0.577664
Target:  5'- gGGCgucagGCGCAGcGGCuguCCUCCcUGCccGCCCu -3'
miRNA:   3'- -UCG-----UGCGUC-CCGu--GGAGG-ACG--CGGGu -5'
14617 5' -63.3 NC_003521.1 + 98421 0.67 0.576714
Target:  5'- cGUugGcCAGGGCggccagggccgcgGCCUCCUGgGCUa- -3'
miRNA:   3'- uCGugC-GUCCCG-------------UGGAGGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 212654 0.7 0.408409
Target:  5'- gAGCAUGCAGGGUAUCagCaUGC-CCCAg -3'
miRNA:   3'- -UCGUGCGUCCCGUGGagG-ACGcGGGU- -5'
14617 5' -63.3 NC_003521.1 + 27424 0.67 0.625482
Target:  5'- cGCACGUAGG---CCUCCagGCaGCCCAg -3'
miRNA:   3'- uCGUGCGUCCcguGGAGGa-CG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 129558 0.66 0.644683
Target:  5'- uGGCACgGCGGGcccgacgaugGCugCUCCgccGCGCCg- -3'
miRNA:   3'- -UCGUG-CGUCC----------CGugGAGGa--CGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 112364 0.66 0.654274
Target:  5'- cGCACGCGGcGGCugCggcgUCU-CGUCCAc -3'
miRNA:   3'- uCGUGCGUC-CCGugGa---GGAcGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 228063 0.66 0.654274
Target:  5'- cGCACGCGcGGGUcccagcucACgUCCgagGCGCCgGa -3'
miRNA:   3'- uCGUGCGU-CCCG--------UGgAGGa--CGCGGgU- -5'
14617 5' -63.3 NC_003521.1 + 88548 0.69 0.511369
Target:  5'- cGGCcuccucgGgGCAGGGCACCagCUG-GCCCGc -3'
miRNA:   3'- -UCG-------UgCGUCCCGUGGagGACgCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 55728 0.69 0.503176
Target:  5'- cGGCGCGCA--GCGCCUCCcaGCGCgCGg -3'
miRNA:   3'- -UCGUGCGUccCGUGGAGGa-CGCGgGU- -5'
14617 5' -63.3 NC_003521.1 + 131460 0.69 0.493242
Target:  5'- aGGcCGCGCucucGGCcucgucgGCCUCCUGCGCCg- -3'
miRNA:   3'- -UC-GUGCGuc--CCG-------UGGAGGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 102843 0.69 0.485181
Target:  5'- aAGCGCGcCAGGGCGCCcguggcguaggUCUGgGCCg- -3'
miRNA:   3'- -UCGUGC-GUCCCGUGGa----------GGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 28753 0.66 0.663849
Target:  5'- cGCGCGCGGGccGCGCCaccgcCCUaGCGCUg- -3'
miRNA:   3'- uCGUGCGUCC--CGUGGa----GGA-CGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 102332 0.66 0.669584
Target:  5'- cGUGCGCGuGGGCGCCgacgCCgggguggcggcagGCGCUCu -3'
miRNA:   3'- uCGUGCGU-CCCGUGGa---GGa------------CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 121946 0.66 0.654274
Target:  5'- cGuCACGUucuGCACCUCCU-CGCCCGu -3'
miRNA:   3'- uC-GUGCGuccCGUGGAGGAcGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 167400 0.71 0.400353
Target:  5'- gGGCACGCuagugGGGGCGCUUCggCUGCuGUCCu -3'
miRNA:   3'- -UCGUGCG-----UCCCGUGGAG--GACG-CGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.