miRNA display CGI


Results 81 - 100 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 50232 0.71 0.384551
Target:  5'- cAGguCGCGGGGC-CaCUCCU-CGCCCu -3'
miRNA:   3'- -UCguGCGUCCCGuG-GAGGAcGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 150444 0.72 0.342555
Target:  5'- gAGCGCGCccGGGguCCUCCUggucuggggcggcgaGCGCCUg -3'
miRNA:   3'- -UCGUGCGu-CCCguGGAGGA---------------CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 217234 0.72 0.332587
Target:  5'- gAGgAUGCAGGccaGCACC-CCcGCGCCCAc -3'
miRNA:   3'- -UCgUGCGUCC---CGUGGaGGaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 154006 0.67 0.584323
Target:  5'- cAGCACGCAcGGGUcgcgcagcACCUggugcaugcucuugCCgcggcagGCGCCCAu -3'
miRNA:   3'- -UCGUGCGU-CCCG--------UGGA--------------GGa------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 46518 0.67 0.587182
Target:  5'- uGCugGCAcacGGGCGucuUCUCCagGCGCaCCAg -3'
miRNA:   3'- uCGugCGU---CCCGU---GGAGGa-CGCG-GGU- -5'
14617 5' -63.3 NC_003521.1 + 168939 0.67 0.596729
Target:  5'- cGCAgGCAGGGcCGCCg-CUGuCGCCg- -3'
miRNA:   3'- uCGUgCGUCCC-GUGGagGAC-GCGGgu -5'
14617 5' -63.3 NC_003521.1 + 28753 0.66 0.663849
Target:  5'- cGCGCGCGGGccGCGCCaccgcCCUaGCGCUg- -3'
miRNA:   3'- uCGUGCGUCC--CGUGGa----GGA-CGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 218626 0.66 0.654274
Target:  5'- cAGCGCGCGGcGGUaagcgGCCacggCCggcgGCGCCUc -3'
miRNA:   3'- -UCGUGCGUC-CCG-----UGGa---GGa---CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 228063 0.66 0.654274
Target:  5'- cGCACGCGcGGGUcccagcucACgUCCgagGCGCCgGa -3'
miRNA:   3'- uCGUGCGU-CCCG--------UGgAGGa--CGCGGgU- -5'
14617 5' -63.3 NC_003521.1 + 121946 0.66 0.654274
Target:  5'- cGuCACGUucuGCACCUCCU-CGCCCGu -3'
miRNA:   3'- uC-GUGCGuccCGUGGAGGAcGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 112364 0.66 0.654274
Target:  5'- cGCACGCGGcGGCugCggcgUCU-CGUCCAc -3'
miRNA:   3'- uCGUGCGUC-CCGugGa---GGAcGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 129558 0.66 0.644683
Target:  5'- uGGCACgGCGGGcccgacgaugGCugCUCCgccGCGCCg- -3'
miRNA:   3'- -UCGUG-CGUCC----------CGugGAGGa--CGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 27424 0.67 0.625482
Target:  5'- cGCACGUAGG---CCUCCagGCaGCCCAg -3'
miRNA:   3'- uCGUGCGUCCcguGGAGGa-CG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 223155 0.67 0.615884
Target:  5'- gGGuUACGCAGGGcCACCgug-GUGCCCc -3'
miRNA:   3'- -UC-GUGCGUCCC-GUGGaggaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 211135 0.67 0.615884
Target:  5'- gAGgACGCAGcGGaucauCCUCCaGuCGCCCAu -3'
miRNA:   3'- -UCgUGCGUC-CCgu---GGAGGaC-GCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 122643 0.67 0.613007
Target:  5'- cAGC-CGCAuGGGCAgCaggUCCUggagcgcgaucgagGCGCCCAg -3'
miRNA:   3'- -UCGuGCGU-CCCGUgG---AGGA--------------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 202552 0.67 0.606298
Target:  5'- uGCGCGCcggccuccuGGGGCugCUgacCCUGgGCCg- -3'
miRNA:   3'- uCGUGCG---------UCCCGugGA---GGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 239842 0.67 0.596729
Target:  5'- cGGCccaGCGGGaGCagaccgccgGCCUCUcguUGCGCCCAc -3'
miRNA:   3'- -UCGug-CGUCC-CG---------UGGAGG---ACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 113024 0.67 0.596729
Target:  5'- cGGCACGUgcuGGuGCGCCUCUUucacaaacGCGCCg- -3'
miRNA:   3'- -UCGUGCGu--CC-CGUGGAGGA--------CGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 68156 0.67 0.596729
Target:  5'- --gGCGCAGGuGCugCgUCUGCGCCa- -3'
miRNA:   3'- ucgUGCGUCC-CGugGaGGACGCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.