Results 101 - 120 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14617 | 5' | -63.3 | NC_003521.1 | + | 28753 | 0.66 | 0.663849 |
Target: 5'- cGCGCGCGGGccGCGCCaccgcCCUaGCGCUg- -3' miRNA: 3'- uCGUGCGUCC--CGUGGa----GGA-CGCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 27424 | 0.67 | 0.625482 |
Target: 5'- cGCACGUAGG---CCUCCagGCaGCCCAg -3' miRNA: 3'- uCGUGCGUCCcguGGAGGa-CG-CGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 228063 | 0.66 | 0.654274 |
Target: 5'- cGCACGCGcGGGUcccagcucACgUCCgagGCGCCgGa -3' miRNA: 3'- uCGUGCGU-CCCG--------UGgAGGa--CGCGGgU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 121946 | 0.66 | 0.654274 |
Target: 5'- cGuCACGUucuGCACCUCCU-CGCCCGu -3' miRNA: 3'- uC-GUGCGuccCGUGGAGGAcGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 112364 | 0.66 | 0.654274 |
Target: 5'- cGCACGCGGcGGCugCggcgUCU-CGUCCAc -3' miRNA: 3'- uCGUGCGUC-CCGugGa---GGAcGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 68156 | 0.67 | 0.596729 |
Target: 5'- --gGCGCAGGuGCugCgUCUGCGCCa- -3' miRNA: 3'- ucgUGCGUCC-CGugGaGGACGCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 168939 | 0.67 | 0.596729 |
Target: 5'- cGCAgGCAGGGcCGCCg-CUGuCGCCg- -3' miRNA: 3'- uCGUgCGUCCC-GUGGagGAC-GCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 46518 | 0.67 | 0.587182 |
Target: 5'- uGCugGCAcacGGGCGucuUCUCCagGCGCaCCAg -3' miRNA: 3'- uCGugCGU---CCCGU---GGAGGa-CGCG-GGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 88548 | 0.69 | 0.511369 |
Target: 5'- cGGCcuccucgGgGCAGGGCACCagCUG-GCCCGc -3' miRNA: 3'- -UCG-------UgCGUCCCGUGGagGACgCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 216363 | 0.68 | 0.557794 |
Target: 5'- cGCugGCcaggcagagcagaAGGGCuGCCUCggGCGUCCAc -3' miRNA: 3'- uCGugCG-------------UCCCG-UGGAGgaCGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 240464 | 0.68 | 0.530692 |
Target: 5'- cAGCGguCGCAGGcGcCGCCUCCgGCaGCUCAc -3' miRNA: 3'- -UCGU--GCGUCC-C-GUGGAGGaCG-CGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 37486 | 0.68 | 0.539987 |
Target: 5'- uGC-CGCAGGGCACCcCCauCGCCa- -3' miRNA: 3'- uCGuGCGUCCCGUGGaGGacGCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 196410 | 0.68 | 0.539987 |
Target: 5'- gGGCGgGCAGcGGCACagacagUCgCUGuCGCCCGg -3' miRNA: 3'- -UCGUgCGUC-CCGUGg-----AG-GAC-GCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 148711 | 0.68 | 0.549337 |
Target: 5'- cAGCugGUAcGGCauccucgagGCCUCC-GUGCCCAu -3' miRNA: 3'- -UCGugCGUcCCG---------UGGAGGaCGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 219146 | 0.68 | 0.558736 |
Target: 5'- gAGaCAgGCAGGGUACCagCagGCGCCgCAg -3' miRNA: 3'- -UC-GUgCGUCCCGUGGagGa-CGCGG-GU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 73148 | 0.68 | 0.568181 |
Target: 5'- cAGCG-GCGGcGGCGCCgccucggCCUGCGaCCUg -3' miRNA: 3'- -UCGUgCGUC-CCGUGGa------GGACGC-GGGu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 145427 | 0.67 | 0.576714 |
Target: 5'- gGGCuuGCuGGGCGCCUcgguggaCCUGUGCUUc -3' miRNA: 3'- -UCGugCGuCCCGUGGA-------GGACGCGGGu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 116874 | 0.67 | 0.577664 |
Target: 5'- cGCGCGCAGuGGCGCggCUgcggcgGCGCgCCGg -3' miRNA: 3'- uCGUGCGUC-CCGUGgaGGa-----CGCG-GGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 154006 | 0.67 | 0.584323 |
Target: 5'- cAGCACGCAcGGGUcgcgcagcACCUggugcaugcucuugCCgcggcagGCGCCCAu -3' miRNA: 3'- -UCGUGCGU-CCCG--------UGGA--------------GGa------CGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 224527 | 0.67 | 0.577664 |
Target: 5'- aAGC-CGCcGGGCcgguaggcACC-CCgGCGCCCAg -3' miRNA: 3'- -UCGuGCGuCCCG--------UGGaGGaCGCGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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