miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 218626 0.66 0.654274
Target:  5'- cAGCGCGCGGcGGUaagcgGCCacggCCggcgGCGCCUc -3'
miRNA:   3'- -UCGUGCGUC-CCG-----UGGa---GGa---CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 73942 0.66 0.653315
Target:  5'- cGCGCGCccgcGGacuugauGUACgaCCUGCGCCCGc -3'
miRNA:   3'- uCGUGCGu---CC-------CGUGgaGGACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 129558 0.66 0.644683
Target:  5'- uGGCACgGCGGGcccgacgaugGCugCUCCgccGCGCCg- -3'
miRNA:   3'- -UCGUG-CGUCC----------CGugGAGGa--CGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 233541 0.66 0.644683
Target:  5'- cGCGuaauCGUAGGGgGCCUagUGCGUCCGu -3'
miRNA:   3'- uCGU----GCGUCCCgUGGAggACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 27424 0.67 0.625482
Target:  5'- cGCACGUAGG---CCUCCagGCaGCCCAg -3'
miRNA:   3'- uCGUGCGUCCcguGGAGGa-CG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 25539 0.67 0.625482
Target:  5'- cGCugGCGGuGGCcuGCCUCUgcaucuCGCCCu -3'
miRNA:   3'- uCGugCGUC-CCG--UGGAGGac----GCGGGu -5'
14617 5' -63.3 NC_003521.1 + 223155 0.67 0.615884
Target:  5'- gGGuUACGCAGGGcCACCgug-GUGCCCc -3'
miRNA:   3'- -UC-GUGCGUCCC-GUGGaggaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 211135 0.67 0.615884
Target:  5'- gAGgACGCAGcGGaucauCCUCCaGuCGCCCAu -3'
miRNA:   3'- -UCgUGCGUC-CCgu---GGAGGaC-GCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 155407 0.67 0.615884
Target:  5'- cGGgGgGCuGGGCACCggaggCCUGCuGCCg- -3'
miRNA:   3'- -UCgUgCGuCCCGUGGa----GGACG-CGGgu -5'
14617 5' -63.3 NC_003521.1 + 122643 0.67 0.613007
Target:  5'- cAGC-CGCAuGGGCAgCaggUCCUggagcgcgaucgagGCGCCCAg -3'
miRNA:   3'- -UCGuGCGU-CCCGUgG---AGGA--------------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 130164 0.67 0.606298
Target:  5'- cGCugGCcgaccGGGCcgugACCgugCCgGCGCCCGg -3'
miRNA:   3'- uCGugCGu----CCCG----UGGa--GGaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 2324 0.67 0.606298
Target:  5'- uGCGCGCcggccuccuGGGGCugCUgacCCUGgGCCg- -3'
miRNA:   3'- uCGUGCG---------UCCCGugGA---GGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 202552 0.67 0.606298
Target:  5'- uGCGCGCcggccuccuGGGGCugCUgacCCUGgGCCg- -3'
miRNA:   3'- uCGUGCG---------UCCCGugGA---GGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 113024 0.67 0.596729
Target:  5'- cGGCACGUgcuGGuGCGCCUCUUucacaaacGCGCCg- -3'
miRNA:   3'- -UCGUGCGu--CC-CGUGGAGGA--------CGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 68156 0.67 0.596729
Target:  5'- --gGCGCAGGuGCugCgUCUGCGCCa- -3'
miRNA:   3'- ucgUGCGUCC-CGugGaGGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 39615 0.67 0.596729
Target:  5'- cGGCccaGCGGGaGCagaccgccgGCCUCUcguUGCGCCCAc -3'
miRNA:   3'- -UCGug-CGUCC-CG---------UGGAGG---ACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 168939 0.67 0.596729
Target:  5'- cGCAgGCAGGGcCGCCg-CUGuCGCCg- -3'
miRNA:   3'- uCGUgCGUCCC-GUGGagGAC-GCGGgu -5'
14617 5' -63.3 NC_003521.1 + 239842 0.67 0.596729
Target:  5'- cGGCccaGCGGGaGCagaccgccgGCCUCUcguUGCGCCCAc -3'
miRNA:   3'- -UCGug-CGUCC-CG---------UGGAGG---ACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 99946 0.67 0.596729
Target:  5'- cGCACGCAGGGgGgCggCgGCGCCUc -3'
miRNA:   3'- uCGUGCGUCCCgUgGagGaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 85860 0.67 0.596729
Target:  5'- cGCAgaugaUGCAGGGCACCag--GCGCUCGc -3'
miRNA:   3'- uCGU-----GCGUCCCGUGGaggaCGCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.