miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14618 3' -59.9 NC_003521.1 + 4140 0.66 0.815219
Target:  5'- gAGCGgGCCGGCGGCuCUCCccuuccccAGGa---- -3'
miRNA:   3'- -UCGUgCGGCUGCCG-GAGG--------UCCaguag -5'
14618 3' -59.9 NC_003521.1 + 164483 0.66 0.815219
Target:  5'- uGGUGCGCaaGACGGCCUgCgAGuUCGUCa -3'
miRNA:   3'- -UCGUGCGg-CUGCCGGA-GgUCcAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 160334 0.66 0.815219
Target:  5'- gGGCgGCGCgG-UGGCCUCC--GUCGUCg -3'
miRNA:   3'- -UCG-UGCGgCuGCCGGAGGucCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 88535 0.67 0.806899
Target:  5'- aGGCGCaCCGAaaCGGCCUCCucGGGgCAg- -3'
miRNA:   3'- -UCGUGcGGCU--GCCGGAGG--UCCaGUag -5'
14618 3' -59.9 NC_003521.1 + 183663 0.67 0.806899
Target:  5'- cGGCACGCCGACGaccuGCCgcgCguGGcCGa- -3'
miRNA:   3'- -UCGUGCGGCUGC----CGGa--GguCCaGUag -5'
14618 3' -59.9 NC_003521.1 + 75996 0.67 0.804375
Target:  5'- cGGC-CGCCGguuccuccucccccGCgGGCgCUCCGGGaUCGUCc -3'
miRNA:   3'- -UCGuGCGGC--------------UG-CCG-GAGGUCC-AGUAG- -5'
14618 3' -59.9 NC_003521.1 + 166117 0.67 0.798437
Target:  5'- cGCGgGCCugcuucagGGCGGCCggCAGGUCGg- -3'
miRNA:   3'- uCGUgCGG--------CUGCCGGagGUCCAGUag -5'
14618 3' -59.9 NC_003521.1 + 233174 0.67 0.798437
Target:  5'- cGCGcCGCCGugGCGGCCgCCGuuaccgucGGUCGUUc -3'
miRNA:   3'- uCGU-GCGGC--UGCCGGaGGU--------CCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 130010 0.67 0.798437
Target:  5'- cGGCGCGCaaCGGCcgcuGGCUUUCAGcGUCAUg -3'
miRNA:   3'- -UCGUGCG--GCUG----CCGGAGGUC-CAGUAg -5'
14618 3' -59.9 NC_003521.1 + 198264 0.67 0.798437
Target:  5'- cGGC-CGCCgGACaGCCagCCGGG-CGUCg -3'
miRNA:   3'- -UCGuGCGG-CUGcCGGa-GGUCCaGUAG- -5'
14618 3' -59.9 NC_003521.1 + 110918 0.67 0.798437
Target:  5'- cAGCAgGCgCG-CGGCCgCCccGUCGUCg -3'
miRNA:   3'- -UCGUgCG-GCuGCCGGaGGucCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 210128 0.67 0.798437
Target:  5'- cGCgGCGCCG-CGuuguuauaaGCCUCaugAGGUCAUCg -3'
miRNA:   3'- uCG-UGCGGCuGC---------CGGAGg--UCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 122941 0.67 0.798437
Target:  5'- cGCGCccgGCCGugcuCGGCCUCgccggggaaacuCAGGUCcUCg -3'
miRNA:   3'- uCGUG---CGGCu---GCCGGAG------------GUCCAGuAG- -5'
14618 3' -59.9 NC_003521.1 + 18584 0.67 0.789838
Target:  5'- gAGCGCGCuCGacugguuccuGCGGCCcagCCGcGGUCAg- -3'
miRNA:   3'- -UCGUGCG-GC----------UGCCGGa--GGU-CCAGUag -5'
14618 3' -59.9 NC_003521.1 + 27210 0.67 0.789838
Target:  5'- uGCGCGgCGACcGCCaccccaacagCCuGGUCAUCg -3'
miRNA:   3'- uCGUGCgGCUGcCGGa---------GGuCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 43832 0.67 0.789838
Target:  5'- cAGC-CGCCGcCGGCCg-CGGGccCGUCa -3'
miRNA:   3'- -UCGuGCGGCuGCCGGagGUCCa-GUAG- -5'
14618 3' -59.9 NC_003521.1 + 127319 0.67 0.789838
Target:  5'- cGCACGCUcucgguGACGGCCaugagggCCAGGcCGg- -3'
miRNA:   3'- uCGUGCGG------CUGCCGGa------GGUCCaGUag -5'
14618 3' -59.9 NC_003521.1 + 151584 0.67 0.788971
Target:  5'- cGCGCGUUaGCGGUCUCCgcgcuggAGGUCGg- -3'
miRNA:   3'- uCGUGCGGcUGCCGGAGG-------UCCAGUag -5'
14618 3' -59.9 NC_003521.1 + 240632 0.67 0.784617
Target:  5'- cGGCGgGCCGGcCGGUCggacguguuucgggCCggcGGGUCGUCg -3'
miRNA:   3'- -UCGUgCGGCU-GCCGGa-------------GG---UCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 200311 0.67 0.784617
Target:  5'- cGGCGgGCCGGcCGGUCggacguguuucgggCCggcGGGUCGUCg -3'
miRNA:   3'- -UCGUgCGGCU-GCCGGa-------------GG---UCCAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.