miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1462 5' -57.2 NC_001335.1 + 3651 0.66 0.663748
Target:  5'- uCGACGUgGAGaUGaCG-GUcACCGACACCc -3'
miRNA:   3'- -GCUGCA-CUC-GC-GCuCGcUGGCUGUGG- -5'
1462 5' -57.2 NC_001335.1 + 14398 0.66 0.653055
Target:  5'- cCGGCGUagGAGCaGCGGugccuGCGcACCGACguacacguaGCCg -3'
miRNA:   3'- -GCUGCA--CUCG-CGCU-----CGC-UGGCUG---------UGG- -5'
1462 5' -57.2 NC_001335.1 + 799 0.66 0.653055
Target:  5'- uCGAgGUGAuuccgacgGCGUguuGGGCGAcucCCGACACg -3'
miRNA:   3'- -GCUgCACU--------CGCG---CUCGCU---GGCUGUGg -5'
1462 5' -57.2 NC_001335.1 + 16628 0.66 0.631622
Target:  5'- -uGCGUGccGGUaGCGAGCacagGGCCGAgGCCc -3'
miRNA:   3'- gcUGCAC--UCG-CGCUCG----CUGGCUgUGG- -5'
1462 5' -57.2 NC_001335.1 + 36610 0.66 0.631622
Target:  5'- cCGugGUGGGgucCGGGUGacgcagaaguccGCUGACACCg -3'
miRNA:   3'- -GCugCACUCgc-GCUCGC------------UGGCUGUGG- -5'
1462 5' -57.2 NC_001335.1 + 5340 0.66 0.620902
Target:  5'- gGGCGUGaAGCGCGAcgagGUGACCaagcgGGucUACCa -3'
miRNA:   3'- gCUGCAC-UCGCGCU----CGCUGG-----CU--GUGG- -5'
1462 5' -57.2 NC_001335.1 + 20809 0.66 0.620902
Target:  5'- aGACGaGGGCuCGAaCGACCcACACCc -3'
miRNA:   3'- gCUGCaCUCGcGCUcGCUGGcUGUGG- -5'
1462 5' -57.2 NC_001335.1 + 4692 0.66 0.620902
Target:  5'- cCGuCGcGAGCGCGGGCcaugucgugGACCcACugCg -3'
miRNA:   3'- -GCuGCaCUCGCGCUCG---------CUGGcUGugG- -5'
1462 5' -57.2 NC_001335.1 + 12051 0.66 0.610191
Target:  5'- uCGACucgaUGAacaGCGGGCGACCGcucuuguccuucGCGCCg -3'
miRNA:   3'- -GCUGc---ACUcg-CGCUCGCUGGC------------UGUGG- -5'
1462 5' -57.2 NC_001335.1 + 38376 0.66 0.609121
Target:  5'- cCGACGaguauuuggcGAGuCGCGGGCuGGCCGGCcgagcggaacuaaGCCg -3'
miRNA:   3'- -GCUGCa---------CUC-GCGCUCG-CUGGCUG-------------UGG- -5'
1462 5' -57.2 NC_001335.1 + 49001 0.66 0.605911
Target:  5'- aCGGCGUG-GCGUGGGCaaagaaagucuucGCCGAgAUCu -3'
miRNA:   3'- -GCUGCACuCGCGCUCGc------------UGGCUgUGG- -5'
1462 5' -57.2 NC_001335.1 + 7459 0.67 0.599498
Target:  5'- gGAUGUGGGCGUu-GCaGAUCGACAg- -3'
miRNA:   3'- gCUGCACUCGCGcuCG-CUGGCUGUgg -5'
1462 5' -57.2 NC_001335.1 + 34460 0.67 0.588832
Target:  5'- aCGACGUGAGcCGCaucCGGCCGcaagGgGCCa -3'
miRNA:   3'- -GCUGCACUC-GCGcucGCUGGC----UgUGG- -5'
1462 5' -57.2 NC_001335.1 + 48797 0.67 0.55707
Target:  5'- gGugGUcGAGCaggacGCG-GCGACCgGACGCg -3'
miRNA:   3'- gCugCA-CUCG-----CGCuCGCUGG-CUGUGg -5'
1462 5' -57.2 NC_001335.1 + 42345 0.67 0.55707
Target:  5'- cCGGCGcGAGcCGCGuGCGuCuCGGCGuCCa -3'
miRNA:   3'- -GCUGCaCUC-GCGCuCGCuG-GCUGU-GG- -5'
1462 5' -57.2 NC_001335.1 + 4196 0.68 0.546587
Target:  5'- uGACGUGuAGCucaaugGCaGAGCGcCCGACugUu -3'
miRNA:   3'- gCUGCAC-UCG------CG-CUCGCuGGCUGugG- -5'
1462 5' -57.2 NC_001335.1 + 25987 0.68 0.525818
Target:  5'- gCGAcCGUG-GCGaCGAGCGucagGCCGucgacCACCa -3'
miRNA:   3'- -GCU-GCACuCGC-GCUCGC----UGGCu----GUGG- -5'
1462 5' -57.2 NC_001335.1 + 46123 0.68 0.524788
Target:  5'- gCGAUGUGcgcuGCGCuccgguacucacaGAGCGgggaaGCCGAUGCCu -3'
miRNA:   3'- -GCUGCACu---CGCG-------------CUCGC-----UGGCUGUGG- -5'
1462 5' -57.2 NC_001335.1 + 18582 0.68 0.515546
Target:  5'- uGGCGcaaGGCGUGGGCGuucaACCG-CACCu -3'
miRNA:   3'- gCUGCac-UCGCGCUCGC----UGGCuGUGG- -5'
1462 5' -57.2 NC_001335.1 + 22598 0.68 0.505355
Target:  5'- gCGGCGUGgccGGCGgugacgacuuCGAGCGACUGAaCAUa -3'
miRNA:   3'- -GCUGCAC---UCGC----------GCUCGCUGGCU-GUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.