Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14620 | 3' | -51.7 | NC_003521.1 | + | 234473 | 0.66 | 0.997348 |
Target: 5'- cGGCCC-CUCUGG-GAUccGGAUCUGg- -3' miRNA: 3'- aCUGGGuGAGGCCuCUA--UUUAGGCau -5' |
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14620 | 3' | -51.7 | NC_003521.1 | + | 37225 | 0.66 | 0.997348 |
Target: 5'- cGGCCUcggggguggAgaCCGGAGAgGAGUCUGUGg -3' miRNA: 3'- aCUGGG---------UgaGGCCUCUaUUUAGGCAU- -5' |
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14620 | 3' | -51.7 | NC_003521.1 | + | 162336 | 0.66 | 0.996877 |
Target: 5'- cGGCCCG-UCC-GAGGUAAGUCaCGUc -3' miRNA: 3'- aCUGGGUgAGGcCUCUAUUUAG-GCAu -5' |
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14620 | 3' | -51.7 | NC_003521.1 | + | 129354 | 0.66 | 0.996877 |
Target: 5'- aGACCCACUCCaGGcGGUugcaGAAggugCCGa- -3' miRNA: 3'- aCUGGGUGAGG-CCuCUA----UUUa---GGCau -5' |
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14620 | 3' | -51.7 | NC_003521.1 | + | 67970 | 0.66 | 0.996877 |
Target: 5'- cGGCCUcagACUCCGaGAGc-GAGUCCGa- -3' miRNA: 3'- aCUGGG---UGAGGC-CUCuaUUUAGGCau -5' |
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14620 | 3' | -51.7 | NC_003521.1 | + | 70986 | 0.66 | 0.995727 |
Target: 5'- aGGCCCugUCCGu-GGUGGGacCCGUAc -3' miRNA: 3'- aCUGGGugAGGCcuCUAUUUa-GGCAU- -5' |
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14620 | 3' | -51.7 | NC_003521.1 | + | 214731 | 0.66 | 0.995727 |
Target: 5'- cUGGCCgACUCCGGAG------CCGUc -3' miRNA: 3'- -ACUGGgUGAGGCCUCuauuuaGGCAu -5' |
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14620 | 3' | -51.7 | NC_003521.1 | + | 200501 | 0.66 | 0.995033 |
Target: 5'- gGACCCGCagCGGAGGccGGAUCgGa- -3' miRNA: 3'- aCUGGGUGagGCCUCUa-UUUAGgCau -5' |
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14620 | 3' | -51.7 | NC_003521.1 | + | 273 | 0.66 | 0.995033 |
Target: 5'- gGACCCGCagCGGAGGccGGAUCgGa- -3' miRNA: 3'- aCUGGGUGagGCCUCUa-UUUAGgCau -5' |
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14620 | 3' | -51.7 | NC_003521.1 | + | 88540 | 0.67 | 0.994252 |
Target: 5'- aUGAUCCGCggcgugCUGGAGG----UCCGUAc -3' miRNA: 3'- -ACUGGGUGa-----GGCCUCUauuuAGGCAU- -5' |
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14620 | 3' | -51.7 | NC_003521.1 | + | 150202 | 0.67 | 0.994252 |
Target: 5'- -cGCCC-CUCCGGGGuaccguAUCCGg- -3' miRNA: 3'- acUGGGuGAGGCCUCuauu--UAGGCau -5' |
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14620 | 3' | -51.7 | NC_003521.1 | + | 94740 | 0.67 | 0.993374 |
Target: 5'- cGAUCCGCUCCGGG------UCCGa- -3' miRNA: 3'- aCUGGGUGAGGCCUcuauuuAGGCau -5' |
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14620 | 3' | -51.7 | NC_003521.1 | + | 66307 | 0.67 | 0.992392 |
Target: 5'- -aGCCgAC-CCGGAGGUGAuccaagCCGUGg -3' miRNA: 3'- acUGGgUGaGGCCUCUAUUua----GGCAU- -5' |
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14620 | 3' | -51.7 | NC_003521.1 | + | 90067 | 0.67 | 0.991297 |
Target: 5'- cGACgCGCUCgCGGAGc--AGUCCGg- -3' miRNA: 3'- aCUGgGUGAG-GCCUCuauUUAGGCau -5' |
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14620 | 3' | -51.7 | NC_003521.1 | + | 119941 | 0.67 | 0.990082 |
Target: 5'- -cACCCGCUCCaGGGGc--AGUCCGa- -3' miRNA: 3'- acUGGGUGAGG-CCUCuauUUAGGCau -5' |
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14620 | 3' | -51.7 | NC_003521.1 | + | 205009 | 0.68 | 0.981901 |
Target: 5'- aGACCCGCUaacgacggcgugCCGcGAcgcccGAUGGAUCCGUu -3' miRNA: 3'- aCUGGGUGA------------GGC-CU-----CUAUUUAGGCAu -5' |
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14620 | 3' | -51.7 | NC_003521.1 | + | 172852 | 0.68 | 0.981901 |
Target: 5'- gGACUCGCUCuCGGAGucUGAggCCGa- -3' miRNA: 3'- aCUGGGUGAG-GCCUCu-AUUuaGGCau -5' |
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14620 | 3' | -51.7 | NC_003521.1 | + | 184606 | 0.69 | 0.97343 |
Target: 5'- cGugCCACUUCGGGGAguacgacgccCCGUGc -3' miRNA: 3'- aCugGGUGAGGCCUCUauuua-----GGCAU- -5' |
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14620 | 3' | -51.7 | NC_003521.1 | + | 93717 | 0.69 | 0.969463 |
Target: 5'- cUGACCgGCgUCGGAGAaAAGUCgCGUGa -3' miRNA: 3'- -ACUGGgUGaGGCCUCUaUUUAG-GCAU- -5' |
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14620 | 3' | -51.7 | NC_003521.1 | + | 164788 | 0.71 | 0.928524 |
Target: 5'- cGGCCCGCUCCGaGGAgcug-CCGUc -3' miRNA: 3'- aCUGGGUGAGGCcUCUauuuaGGCAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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