miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 3' -51.7 NC_003521.1 + 234473 0.66 0.997348
Target:  5'- cGGCCC-CUCUGG-GAUccGGAUCUGg- -3'
miRNA:   3'- aCUGGGuGAGGCCuCUA--UUUAGGCau -5'
14620 3' -51.7 NC_003521.1 + 37225 0.66 0.997348
Target:  5'- cGGCCUcggggguggAgaCCGGAGAgGAGUCUGUGg -3'
miRNA:   3'- aCUGGG---------UgaGGCCUCUaUUUAGGCAU- -5'
14620 3' -51.7 NC_003521.1 + 162336 0.66 0.996877
Target:  5'- cGGCCCG-UCC-GAGGUAAGUCaCGUc -3'
miRNA:   3'- aCUGGGUgAGGcCUCUAUUUAG-GCAu -5'
14620 3' -51.7 NC_003521.1 + 129354 0.66 0.996877
Target:  5'- aGACCCACUCCaGGcGGUugcaGAAggugCCGa- -3'
miRNA:   3'- aCUGGGUGAGG-CCuCUA----UUUa---GGCau -5'
14620 3' -51.7 NC_003521.1 + 67970 0.66 0.996877
Target:  5'- cGGCCUcagACUCCGaGAGc-GAGUCCGa- -3'
miRNA:   3'- aCUGGG---UGAGGC-CUCuaUUUAGGCau -5'
14620 3' -51.7 NC_003521.1 + 70986 0.66 0.995727
Target:  5'- aGGCCCugUCCGu-GGUGGGacCCGUAc -3'
miRNA:   3'- aCUGGGugAGGCcuCUAUUUa-GGCAU- -5'
14620 3' -51.7 NC_003521.1 + 214731 0.66 0.995727
Target:  5'- cUGGCCgACUCCGGAG------CCGUc -3'
miRNA:   3'- -ACUGGgUGAGGCCUCuauuuaGGCAu -5'
14620 3' -51.7 NC_003521.1 + 200501 0.66 0.995033
Target:  5'- gGACCCGCagCGGAGGccGGAUCgGa- -3'
miRNA:   3'- aCUGGGUGagGCCUCUa-UUUAGgCau -5'
14620 3' -51.7 NC_003521.1 + 273 0.66 0.995033
Target:  5'- gGACCCGCagCGGAGGccGGAUCgGa- -3'
miRNA:   3'- aCUGGGUGagGCCUCUa-UUUAGgCau -5'
14620 3' -51.7 NC_003521.1 + 88540 0.67 0.994252
Target:  5'- aUGAUCCGCggcgugCUGGAGG----UCCGUAc -3'
miRNA:   3'- -ACUGGGUGa-----GGCCUCUauuuAGGCAU- -5'
14620 3' -51.7 NC_003521.1 + 150202 0.67 0.994252
Target:  5'- -cGCCC-CUCCGGGGuaccguAUCCGg- -3'
miRNA:   3'- acUGGGuGAGGCCUCuauu--UAGGCau -5'
14620 3' -51.7 NC_003521.1 + 94740 0.67 0.993374
Target:  5'- cGAUCCGCUCCGGG------UCCGa- -3'
miRNA:   3'- aCUGGGUGAGGCCUcuauuuAGGCau -5'
14620 3' -51.7 NC_003521.1 + 66307 0.67 0.992392
Target:  5'- -aGCCgAC-CCGGAGGUGAuccaagCCGUGg -3'
miRNA:   3'- acUGGgUGaGGCCUCUAUUua----GGCAU- -5'
14620 3' -51.7 NC_003521.1 + 90067 0.67 0.991297
Target:  5'- cGACgCGCUCgCGGAGc--AGUCCGg- -3'
miRNA:   3'- aCUGgGUGAG-GCCUCuauUUAGGCau -5'
14620 3' -51.7 NC_003521.1 + 119941 0.67 0.990082
Target:  5'- -cACCCGCUCCaGGGGc--AGUCCGa- -3'
miRNA:   3'- acUGGGUGAGG-CCUCuauUUAGGCau -5'
14620 3' -51.7 NC_003521.1 + 205009 0.68 0.981901
Target:  5'- aGACCCGCUaacgacggcgugCCGcGAcgcccGAUGGAUCCGUu -3'
miRNA:   3'- aCUGGGUGA------------GGC-CU-----CUAUUUAGGCAu -5'
14620 3' -51.7 NC_003521.1 + 172852 0.68 0.981901
Target:  5'- gGACUCGCUCuCGGAGucUGAggCCGa- -3'
miRNA:   3'- aCUGGGUGAG-GCCUCu-AUUuaGGCau -5'
14620 3' -51.7 NC_003521.1 + 184606 0.69 0.97343
Target:  5'- cGugCCACUUCGGGGAguacgacgccCCGUGc -3'
miRNA:   3'- aCugGGUGAGGCCUCUauuua-----GGCAU- -5'
14620 3' -51.7 NC_003521.1 + 93717 0.69 0.969463
Target:  5'- cUGACCgGCgUCGGAGAaAAGUCgCGUGa -3'
miRNA:   3'- -ACUGGgUGaGGCCUCUaUUUAG-GCAU- -5'
14620 3' -51.7 NC_003521.1 + 164788 0.71 0.928524
Target:  5'- cGGCCCGCUCCGaGGAgcug-CCGUc -3'
miRNA:   3'- aCUGGGUGAGGCcUCUauuuaGGCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.