Results 121 - 140 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 142248 | 0.69 | 0.54188 |
Target: 5'- cGCGgGCCcgcUCCuCCUCGGCCgacUCGGGc -3' miRNA: 3'- cCGCgCGG---AGGuGGAGCCGGa--GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 144471 | 0.69 | 0.54188 |
Target: 5'- cGGCGCGCCaCCACCauaaCCUgCGAGg -3' miRNA: 3'- -CCGCGCGGaGGUGGagccGGAgGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 52798 | 0.69 | 0.551045 |
Target: 5'- cGGUGCGgCUCCACCUgGaccGCCUUCa-- -3' miRNA: 3'- -CCGCGCgGAGGUGGAgC---CGGAGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 52374 | 0.69 | 0.560257 |
Target: 5'- aGGCGCGUCauccugaCCGCCgucgCGGCCUUCu-- -3' miRNA: 3'- -CCGCGCGGa------GGUGGa---GCCGGAGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 200395 | 0.69 | 0.51471 |
Target: 5'- cGGCuccgGCCgCCGCUUCGGCCUCCc-- -3' miRNA: 3'- -CCGcg--CGGaGGUGGAGCCGGAGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 81169 | 0.69 | 0.51471 |
Target: 5'- gGGUGCGCCguuggUCCacgcaccagGCCUCGGCgaUCUGGGc -3' miRNA: 3'- -CCGCGCGG-----AGG---------UGGAGCCGg-AGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 220184 | 0.7 | 0.505775 |
Target: 5'- aGGCGC-CCaCCAgCgcgCGGCuCUCCGAGc -3' miRNA: 3'- -CCGCGcGGaGGUgGa--GCCG-GAGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 24681 | 0.7 | 0.478518 |
Target: 5'- uGUGCGCCcagguggccuuccUCUGCCgCGGCCUCCGc- -3' miRNA: 3'- cCGCGCGG-------------AGGUGGaGCCGGAGGCuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 184369 | 0.7 | 0.479386 |
Target: 5'- uGGCgcgGCGCCUCUcggACCUgggccacgaggCGGCCUUCGAc -3' miRNA: 3'- -CCG---CGCGGAGG---UGGA-----------GCCGGAGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 145261 | 0.7 | 0.462173 |
Target: 5'- aGgGCGCCUCCucgGCCUCGGCggCCa-- -3' miRNA: 3'- cCgCGCGGAGG---UGGAGCCGgaGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 113773 | 0.7 | 0.47074 |
Target: 5'- cGGCaccGCGUCUCCAuCCUCGGuuCCUCCc-- -3' miRNA: 3'- -CCG---CGCGGAGGU-GGAGCC--GGAGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 88460 | 0.7 | 0.47074 |
Target: 5'- gGGCGCGCCgCC-CCggcCGGCC-CCaGAGc -3' miRNA: 3'- -CCGCGCGGaGGuGGa--GCCGGaGG-CUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 204108 | 0.7 | 0.505775 |
Target: 5'- uGGCgccacuGCGCCUCCACCUgcucgGGCCaggcgCCGGa -3' miRNA: 3'- -CCG------CGCGGAGGUGGAg----CCGGa----GGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 205004 | 0.7 | 0.478518 |
Target: 5'- cGGCGCGCaccgccagguucuCgcccacgCCGCCguagUCGGCCUUCGGGu -3' miRNA: 3'- -CCGCGCG-------------Ga------GGUGG----AGCCGGAGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 43245 | 0.7 | 0.496907 |
Target: 5'- gGGCGCGCUccaUCCGCCUCaucGCCaUCCu-- -3' miRNA: 3'- -CCGCGCGG---AGGUGGAGc--CGG-AGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 223666 | 0.71 | 0.420632 |
Target: 5'- cGCuGCGCCUCgGCCUCGcGCCgcugCUGGa -3' miRNA: 3'- cCG-CGCGGAGgUGGAGC-CGGa---GGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 13802 | 0.71 | 0.436981 |
Target: 5'- aGGCGCGUUUCCACgUCaGCgUCgGGGu -3' miRNA: 3'- -CCGCGCGGAGGUGgAGcCGgAGgCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 56917 | 0.71 | 0.42876 |
Target: 5'- aGCGCcgcagcaccGCCUCCagcACCUCGGCCUCg--- -3' miRNA: 3'- cCGCG---------CGGAGG---UGGAGCCGGAGgcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 63250 | 0.71 | 0.45369 |
Target: 5'- cGGCGcCGCCaccuuugacgagUCCuuCCUCGGCgaCCGGGu -3' miRNA: 3'- -CCGC-GCGG------------AGGu-GGAGCCGgaGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 176954 | 0.71 | 0.412596 |
Target: 5'- cGGCGCGCCgccucgUCCACCUgugucagGGCCUUgGAc -3' miRNA: 3'- -CCGCGCGG------AGGUGGAg------CCGGAGgCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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