Results 61 - 80 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 54060 | 0.69 | 0.532767 |
Target: 5'- cGC-CGCCUCCGCCgauGCCgCCGAGc -3' miRNA: 3'- cCGcGCGGAGGUGGagcCGGaGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 44758 | 0.69 | 0.532767 |
Target: 5'- -uCGCGCCagUCCACCUcgcCGGCCUuCCGc- -3' miRNA: 3'- ccGCGCGG--AGGUGGA---GCCGGA-GGCuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 200395 | 0.69 | 0.51471 |
Target: 5'- cGGCuccgGCCgCCGCUUCGGCCUCCc-- -3' miRNA: 3'- -CCGcg--CGGaGGUGGAGCCGGAGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 52374 | 0.69 | 0.560257 |
Target: 5'- aGGCGCGUCauccugaCCGCCgucgCGGCCUUCu-- -3' miRNA: 3'- -CCGCGCGGa------GGUGGa---GCCGGAGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 138821 | 0.68 | 0.588125 |
Target: 5'- uGGCGCGCCUgauggcggCgGCUaCGGCCUgCGGc -3' miRNA: 3'- -CCGCGCGGA--------GgUGGaGCCGGAgGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 29357 | 0.68 | 0.629393 |
Target: 5'- uGCGC-CCUgCGCCUCauGGCCUgccccgaccgcgaggCCGAGg -3' miRNA: 3'- cCGCGcGGAgGUGGAG--CCGGA---------------GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 125480 | 0.68 | 0.578802 |
Target: 5'- cGCGcCGcCCUUCAUCUUGGUCUCCa-- -3' miRNA: 3'- cCGC-GC-GGAGGUGGAGCCGGAGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 136146 | 0.68 | 0.578802 |
Target: 5'- uGGCGCGCCgccaCCACCUgcUGGagcCCaUCGAGg -3' miRNA: 3'- -CCGCGCGGa---GGUGGA--GCC---GGaGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 36084 | 0.68 | 0.624692 |
Target: 5'- cGGCgGCGCCUCCAucaccacCCUCGccacCCUCCc-- -3' miRNA: 3'- -CCG-CGCGGAGGU-------GGAGCc---GGAGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 148851 | 0.68 | 0.619992 |
Target: 5'- uGCGUGCCgugcaccgcgCCagcuacgccagccugGCCUCGGCCguggccgacgCCGAGg -3' miRNA: 3'- cCGCGCGGa---------GG---------------UGGAGCCGGa---------GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 196459 | 0.68 | 0.616234 |
Target: 5'- cGCGCGaaCCUCCGCuggcaCUCGGCCcguUCCGc- -3' miRNA: 3'- cCGCGC--GGAGGUG-----GAGCCGG---AGGCuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 142590 | 0.68 | 0.616234 |
Target: 5'- uGGC-CGCCcCCGCCUCcccGCCUCCc-- -3' miRNA: 3'- -CCGcGCGGaGGUGGAGc--CGGAGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 83772 | 0.68 | 0.616234 |
Target: 5'- uGGCgGCGCCccCCGCCgCGcuCCUCCGAc -3' miRNA: 3'- -CCG-CGCGGa-GGUGGaGCc-GGAGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 118954 | 0.68 | 0.616234 |
Target: 5'- gGGCcaGCGCCcgagacagUCCcuCCUCGGUgUCCGAc -3' miRNA: 3'- -CCG--CGCGG--------AGGu-GGAGCCGgAGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 55018 | 0.68 | 0.616234 |
Target: 5'- aGGCGCaGCg-CCAgCgUCGGCggCUCCGAGa -3' miRNA: 3'- -CCGCG-CGgaGGU-GgAGCCG--GAGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 234193 | 0.68 | 0.606847 |
Target: 5'- aGCGgGCCaagcgUUCGCgCgCGGCCUCCGAa -3' miRNA: 3'- cCGCgCGG-----AGGUG-GaGCCGGAGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 117109 | 0.68 | 0.606847 |
Target: 5'- aGGC-CGCCUCCGCCgcucagccgCcGCCUCCu-- -3' miRNA: 3'- -CCGcGCGGAGGUGGa--------GcCGGAGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 162431 | 0.68 | 0.597475 |
Target: 5'- -aCGCGCUuucgguuuccagUCCGCCUCGGCgguguuccucCUCCGGc -3' miRNA: 3'- ccGCGCGG------------AGGUGGAGCCG----------GAGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 211180 | 0.68 | 0.597475 |
Target: 5'- aGGCGcCGCgCUCgGUCUCGuCCUCUGAGg -3' miRNA: 3'- -CCGC-GCG-GAGgUGGAGCcGGAGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 152836 | 0.68 | 0.625632 |
Target: 5'- cGCGCGCCcCCAgauucaccgaguCCUCGcGCCg-CGAGg -3' miRNA: 3'- cCGCGCGGaGGU------------GGAGC-CGGagGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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