miRNA display CGI


Results 81 - 100 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 152836 0.68 0.625632
Target:  5'- cGCGCGCCcCCAgauucaccgaguCCUCGcGCCg-CGAGg -3'
miRNA:   3'- cCGCGCGGaGGU------------GGAGC-CGGagGCUC- -5'
14620 5' -63.3 NC_003521.1 + 196459 0.68 0.616234
Target:  5'- cGCGCGaaCCUCCGCuggcaCUCGGCCcguUCCGc- -3'
miRNA:   3'- cCGCGC--GGAGGUG-----GAGCCGG---AGGCuc -5'
14620 5' -63.3 NC_003521.1 + 142590 0.68 0.616234
Target:  5'- uGGC-CGCCcCCGCCUCcccGCCUCCc-- -3'
miRNA:   3'- -CCGcGCGGaGGUGGAGc--CGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 117109 0.68 0.606847
Target:  5'- aGGC-CGCCUCCGCCgcucagccgCcGCCUCCu-- -3'
miRNA:   3'- -CCGcGCGGAGGUGGa--------GcCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 234193 0.68 0.606847
Target:  5'- aGCGgGCCaagcgUUCGCgCgCGGCCUCCGAa -3'
miRNA:   3'- cCGCgCGG-----AGGUG-GaGCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 118954 0.68 0.616234
Target:  5'- gGGCcaGCGCCcgagacagUCCcuCCUCGGUgUCCGAc -3'
miRNA:   3'- -CCG--CGCGG--------AGGu-GGAGCCGgAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 55018 0.68 0.616234
Target:  5'- aGGCGCaGCg-CCAgCgUCGGCggCUCCGAGa -3'
miRNA:   3'- -CCGCG-CGgaGGU-GgAGCCG--GAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 144026 0.67 0.681887
Target:  5'- cGCGCGCUUCC-CCgucucCGGUCUgCGGc -3'
miRNA:   3'- cCGCGCGGAGGuGGa----GCCGGAgGCUc -5'
14620 5' -63.3 NC_003521.1 + 66570 0.67 0.635034
Target:  5'- uGGCGCGCCagCGCaaCGuGCgUCUGAGc -3'
miRNA:   3'- -CCGCGCGGagGUGgaGC-CGgAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 16889 0.67 0.644434
Target:  5'- cGGC-CGCCUCgACCcccUCGGCCgcgCCu-- -3'
miRNA:   3'- -CCGcGCGGAGgUGG---AGCCGGa--GGcuc -5'
14620 5' -63.3 NC_003521.1 + 123911 0.67 0.644434
Target:  5'- cGGCGCGCggcgcuguuCUCCACCaguugcagCGGCg-CCGAu -3'
miRNA:   3'- -CCGCGCG---------GAGGUGGa-------GCCGgaGGCUc -5'
14620 5' -63.3 NC_003521.1 + 117251 0.67 0.652887
Target:  5'- cGGCGcCGCCgccaucccgCCACCgccgucgUCGGCCguggugCCGGc -3'
miRNA:   3'- -CCGC-GCGGa--------GGUGG-------AGCCGGa-----GGCUc -5'
14620 5' -63.3 NC_003521.1 + 46399 0.67 0.653826
Target:  5'- uGGCGuCGCagaUgCGucCCUCGGCCUCCu-- -3'
miRNA:   3'- -CCGC-GCGg--AgGU--GGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 139061 0.67 0.663203
Target:  5'- cGGCGcCGCagaUCACCcUGGCCUCgGGGc -3'
miRNA:   3'- -CCGC-GCGga-GGUGGaGCCGGAGgCUC- -5'
14620 5' -63.3 NC_003521.1 + 60559 0.67 0.653826
Target:  5'- uGCGCGCCuacuUCCcCCUgCGGUacaCCGAGg -3'
miRNA:   3'- cCGCGCGG----AGGuGGA-GCCGga-GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 179532 0.67 0.653826
Target:  5'- gGGCGCGCaaagucgUCC-CgCUCGGCUUCCu-- -3'
miRNA:   3'- -CCGCGCGg------AGGuG-GAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 24464 0.67 0.672559
Target:  5'- cGCGCggaccacggGCCUCaCACCcucggUGGCCaCCGAGa -3'
miRNA:   3'- cCGCG---------CGGAG-GUGGa----GCCGGaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 120274 0.67 0.681887
Target:  5'- gGGCGCuCCcCCgggACCgcCGGCCgCCGAGg -3'
miRNA:   3'- -CCGCGcGGaGG---UGGa-GCCGGaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 145986 0.67 0.681887
Target:  5'- uGGCGCGCUUcCCGCUgcCGGCUUuuGu- -3'
miRNA:   3'- -CCGCGCGGA-GGUGGa-GCCGGAggCuc -5'
14620 5' -63.3 NC_003521.1 + 56050 0.67 0.663203
Target:  5'- aGGCGCGCguugCC-CCagaucaCGGCCUCCGu- -3'
miRNA:   3'- -CCGCGCGga--GGuGGa-----GCCGGAGGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.