Results 101 - 120 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 117251 | 0.67 | 0.652887 |
Target: 5'- cGGCGcCGCCgccaucccgCCACCgccgucgUCGGCCguggugCCGGc -3' miRNA: 3'- -CCGC-GCGGa--------GGUGG-------AGCCGGa-----GGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 18187 | 0.67 | 0.680955 |
Target: 5'- uGCGCGCCUgCCgGCCcuucgaucacaugUCGGCCgCgGAGu -3' miRNA: 3'- cCGCGCGGA-GG-UGG-------------AGCCGGaGgCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 30082 | 0.67 | 0.681887 |
Target: 5'- -aUGUGCC-CCGCCaCGGCCuacgauUCCGGGa -3' miRNA: 3'- ccGCGCGGaGGUGGaGCCGG------AGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 122940 | 0.67 | 0.635034 |
Target: 5'- -cCGCGCC-CgGCCgugcUCGGCCUcgCCGGGg -3' miRNA: 3'- ccGCGCGGaGgUGG----AGCCGGA--GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 206306 | 0.67 | 0.635034 |
Target: 5'- cGCGCGUCUCgGCCcgCGGCCgcuaCCu-- -3' miRNA: 3'- cCGCGCGGAGgUGGa-GCCGGa---GGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 17250 | 0.67 | 0.644434 |
Target: 5'- aGGCGCGCCguaUUCACCUgaauaCGGauuuaUCUCCGGa -3' miRNA: 3'- -CCGCGCGG---AGGUGGA-----GCC-----GGAGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 104108 | 0.67 | 0.644434 |
Target: 5'- cGGCGCGCUgCCAguCCUCGGCggcgUCCu-- -3' miRNA: 3'- -CCGCGCGGaGGU--GGAGCCGg---AGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 116928 | 0.67 | 0.644434 |
Target: 5'- cGCGCGCCgacagCaCGCgaCaGCUUCCGAGg -3' miRNA: 3'- cCGCGCGGa----G-GUGgaGcCGGAGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 206459 | 0.67 | 0.653826 |
Target: 5'- uGGUGCGCaacgCCcaggACCUgGGCCUCaCGGc -3' miRNA: 3'- -CCGCGCGga--GG----UGGAgCCGGAG-GCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 18094 | 0.67 | 0.657579 |
Target: 5'- cGGCGCgcgagaugagcgGCCUCaACCUggugauccgcacgccCGGCCgcaCCGAGg -3' miRNA: 3'- -CCGCG------------CGGAGgUGGA---------------GCCGGa--GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 207287 | 0.67 | 0.672559 |
Target: 5'- cGGC-CGCCUUUACUucaUCGGCCUCa--- -3' miRNA: 3'- -CCGcGCGGAGGUGG---AGCCGGAGgcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 183722 | 0.67 | 0.672559 |
Target: 5'- cGGCuGCugggGCCUCUACC-CGGCCaUCCu-- -3' miRNA: 3'- -CCG-CG----CGGAGGUGGaGCCGG-AGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 121381 | 0.67 | 0.679092 |
Target: 5'- -uCGCGCCUCCAUCgcgaguacaUCGugcaggugcagaacGCCUUCGAGa -3' miRNA: 3'- ccGCGCGGAGGUGG---------AGC--------------CGGAGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 72144 | 0.67 | 0.681887 |
Target: 5'- aGGaCG-GCCUgCCACCagGGaCCUCCGGc -3' miRNA: 3'- -CC-GCgCGGA-GGUGGagCC-GGAGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 105053 | 0.67 | 0.681887 |
Target: 5'- aGCGCcacuGCCgccaCCGCCuUCGGUC-CCGGGa -3' miRNA: 3'- cCGCG----CGGa---GGUGG-AGCCGGaGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 181863 | 0.67 | 0.681887 |
Target: 5'- cGGCGCGCUUCUucgcGCCagagGGCCUgguggaguUCGAGg -3' miRNA: 3'- -CCGCGCGGAGG----UGGag--CCGGA--------GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 60559 | 0.67 | 0.653826 |
Target: 5'- uGCGCGCCuacuUCCcCCUgCGGUacaCCGAGg -3' miRNA: 3'- cCGCGCGG----AGGuGGA-GCCGga-GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 184195 | 0.66 | 0.745825 |
Target: 5'- uGGUGCGCUUCUucg-UGGaCCUCUGGGa -3' miRNA: 3'- -CCGCGCGGAGGuggaGCC-GGAGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 88745 | 0.66 | 0.745825 |
Target: 5'- cGGCGCaCg-UCGCCgUGGuCCUCCGAGa -3' miRNA: 3'- -CCGCGcGgaGGUGGaGCC-GGAGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 151310 | 0.66 | 0.745825 |
Target: 5'- cGCGCGCaaggCgGCCaggcgggUGGCgUCCGAGg -3' miRNA: 3'- cCGCGCGga--GgUGGa------GCCGgAGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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