Results 121 - 140 of 171 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 184195 | 0.66 | 0.745825 |
Target: 5'- uGGUGCGCUUCUucg-UGGaCCUCUGGGa -3' miRNA: 3'- -CCGCGCGGAGGuggaGCC-GGAGGCUC- -5' |
|||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 145387 | 0.66 | 0.700433 |
Target: 5'- cGGUGCGCgaCgGCCUgGGCCUgcucaUCGAc -3' miRNA: 3'- -CCGCGCGgaGgUGGAgCCGGA-----GGCUc -5' |
|||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 112466 | 0.66 | 0.72787 |
Target: 5'- gGGCGCGCCcggcggggCCACCuacuUCGGCaUCaCGcAGa -3' miRNA: 3'- -CCGCGCGGa-------GGUGG----AGCCGgAG-GC-UC- -5' |
|||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 76393 | 0.66 | 0.736886 |
Target: 5'- cGGCGC-CCUCCACCUUGccgauguagcGCUUCUu-- -3' miRNA: 3'- -CCGCGcGGAGGUGGAGC----------CGGAGGcuc -5' |
|||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 37129 | 0.66 | 0.736886 |
Target: 5'- cGGCGCGCaacaugCCGCg-CGGCUUCUGc- -3' miRNA: 3'- -CCGCGCGga----GGUGgaGCCGGAGGCuc -5' |
|||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 55658 | 0.66 | 0.745825 |
Target: 5'- aGGUGCGCCaCCucguCgUCGGgCCccaCCGAGa -3' miRNA: 3'- -CCGCGCGGaGGu---GgAGCC-GGa--GGCUC- -5' |
|||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 112648 | 0.66 | 0.745825 |
Target: 5'- aGCGCGUCUaCCACCU-GGCCcagaUgGAGa -3' miRNA: 3'- cCGCGCGGA-GGUGGAgCCGGa---GgCUC- -5' |
|||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 196744 | 0.66 | 0.745825 |
Target: 5'- cGGCgGCGCCUgCACCgucugCuGCC-CCGGc -3' miRNA: 3'- -CCG-CGCGGAgGUGGa----GcCGGaGGCUc -5' |
|||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 54712 | 0.66 | 0.745825 |
Target: 5'- gGGCGCGCacauggagAUCUUGGCCgagaggUCCGAGa -3' miRNA: 3'- -CCGCGCGgagg----UGGAGCCGG------AGGCUC- -5' |
|||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 149545 | 0.66 | 0.745825 |
Target: 5'- cGGCGCGCgCUCCuucuucuuCCcCGGUUUCCc-- -3' miRNA: 3'- -CCGCGCG-GAGGu-------GGaGCCGGAGGcuc -5' |
|||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 119535 | 0.66 | 0.736886 |
Target: 5'- gGGuUGUGCCgcagcaCCACCUCGGCg-CCGuGc -3' miRNA: 3'- -CC-GCGCGGa-----GGUGGAGCCGgaGGCuC- -5' |
|||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 58935 | 0.66 | 0.736886 |
Target: 5'- gGGCuGCGCCucgaacUCCACCa-GGCCcUCUGGc -3' miRNA: 3'- -CCG-CGCGG------AGGUGGagCCGG-AGGCUc -5' |
|||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 132604 | 0.66 | 0.700433 |
Target: 5'- cGGCGUcgGCgUCCGCaaCGGCUUCCa-- -3' miRNA: 3'- -CCGCG--CGgAGGUGgaGCCGGAGGcuc -5' |
|||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 146528 | 0.66 | 0.709636 |
Target: 5'- --gGCGgCUCCACC-CGGgucCCUCCGGc -3' miRNA: 3'- ccgCGCgGAGGUGGaGCC---GGAGGCUc -5' |
|||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 75572 | 0.66 | 0.709636 |
Target: 5'- aGCGC-CCUCCuguCCUCGuCCUCCu-- -3' miRNA: 3'- cCGCGcGGAGGu--GGAGCcGGAGGcuc -5' |
|||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 191238 | 0.66 | 0.709636 |
Target: 5'- cGGUGaCGCCUU--CCUCGGCaCUCguCGGGg -3' miRNA: 3'- -CCGC-GCGGAGguGGAGCCG-GAG--GCUC- -5' |
|||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 62857 | 0.66 | 0.718785 |
Target: 5'- aGGUGUGCC-CCGCCUCaGCauccCUCCcGGu -3' miRNA: 3'- -CCGCGCGGaGGUGGAGcCG----GAGGcUC- -5' |
|||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 57574 | 0.66 | 0.718785 |
Target: 5'- cGCGCGCCUUCgagggcGCCggCGGCgaaccCCGAGu -3' miRNA: 3'- cCGCGCGGAGG------UGGa-GCCGga---GGCUC- -5' |
|||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 31739 | 0.66 | 0.72787 |
Target: 5'- cGGCcacCGCCUCCGCCgccucgacCGGCacaUCgGGGu -3' miRNA: 3'- -CCGc--GCGGAGGUGGa-------GCCGg--AGgCUC- -5' |
|||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 145298 | 0.66 | 0.72787 |
Target: 5'- cGGCGUcucGCCgggcaUCCAgUUCGGCCUgaagcaCGAGg -3' miRNA: 3'- -CCGCG---CGG-----AGGUgGAGCCGGAg-----GCUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home