miRNA display CGI


Results 61 - 80 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 209195 0.69 0.560257
Target:  5'- gGGCGC-UUUCCACCUacCGGCCaUCCGc- -3'
miRNA:   3'- -CCGCGcGGAGGUGGA--GCCGG-AGGCuc -5'
14620 5' -63.3 NC_003521.1 + 184789 0.69 0.560257
Target:  5'- cGCGCGCCUggaCGCCcuggUGGCCgccUCCGAc -3'
miRNA:   3'- cCGCGCGGAg--GUGGa---GCCGG---AGGCUc -5'
14620 5' -63.3 NC_003521.1 + 52374 0.69 0.560257
Target:  5'- aGGCGCGUCauccugaCCGCCgucgCGGCCUUCu-- -3'
miRNA:   3'- -CCGCGCGGa------GGUGGa---GCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 103263 0.69 0.560257
Target:  5'- cGCGUGCaCUgCugCUCGGCCggcgCCGu- -3'
miRNA:   3'- cCGCGCG-GAgGugGAGCCGGa---GGCuc -5'
14620 5' -63.3 NC_003521.1 + 125480 0.68 0.578802
Target:  5'- cGCGcCGcCCUUCAUCUUGGUCUCCa-- -3'
miRNA:   3'- cCGC-GC-GGAGGUGGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 136146 0.68 0.578802
Target:  5'- uGGCGCGCCgccaCCACCUgcUGGagcCCaUCGAGg -3'
miRNA:   3'- -CCGCGCGGa---GGUGGA--GCC---GGaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 138821 0.68 0.588125
Target:  5'- uGGCGCGCCUgauggcggCgGCUaCGGCCUgCGGc -3'
miRNA:   3'- -CCGCGCGGA--------GgUGGaGCCGGAgGCUc -5'
14620 5' -63.3 NC_003521.1 + 211180 0.68 0.597475
Target:  5'- aGGCGcCGCgCUCgGUCUCGuCCUCUGAGg -3'
miRNA:   3'- -CCGC-GCG-GAGgUGGAGCcGGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 162431 0.68 0.597475
Target:  5'- -aCGCGCUuucgguuuccagUCCGCCUCGGCgguguuccucCUCCGGc -3'
miRNA:   3'- ccGCGCGG------------AGGUGGAGCCG----------GAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 5321 0.68 0.597475
Target:  5'- cGGCGUGCC-CCGCC--GGCCgcgacUCCGGc -3'
miRNA:   3'- -CCGCGCGGaGGUGGagCCGG-----AGGCUc -5'
14620 5' -63.3 NC_003521.1 + 117109 0.68 0.606847
Target:  5'- aGGC-CGCCUCCGCCgcucagccgCcGCCUCCu-- -3'
miRNA:   3'- -CCGcGCGGAGGUGGa--------GcCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 234193 0.68 0.606847
Target:  5'- aGCGgGCCaagcgUUCGCgCgCGGCCUCCGAa -3'
miRNA:   3'- cCGCgCGG-----AGGUG-GaGCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 206145 0.68 0.606847
Target:  5'- cGCGCaggaggacuGCCUCUACgagcUGGCCUCCGAc -3'
miRNA:   3'- cCGCG---------CGGAGGUGga--GCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 80992 0.68 0.615295
Target:  5'- -uCGCGCCUCCgcgcagcGCCUcaCGGCCggUCCGuGa -3'
miRNA:   3'- ccGCGCGGAGG-------UGGA--GCCGG--AGGCuC- -5'
14620 5' -63.3 NC_003521.1 + 118954 0.68 0.616234
Target:  5'- gGGCcaGCGCCcgagacagUCCcuCCUCGGUgUCCGAc -3'
miRNA:   3'- -CCG--CGCGG--------AGGu-GGAGCCGgAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 142590 0.68 0.616234
Target:  5'- uGGC-CGCCcCCGCCUCcccGCCUCCc-- -3'
miRNA:   3'- -CCGcGCGGaGGUGGAGc--CGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 55018 0.68 0.616234
Target:  5'- aGGCGCaGCg-CCAgCgUCGGCggCUCCGAGa -3'
miRNA:   3'- -CCGCG-CGgaGGU-GgAGCCG--GAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 234450 0.68 0.616234
Target:  5'- cGGCGCcCCUCCGcgaccCCgacCGGCCccUCUGGGa -3'
miRNA:   3'- -CCGCGcGGAGGU-----GGa--GCCGG--AGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 83772 0.68 0.616234
Target:  5'- uGGCgGCGCCccCCGCCgCGcuCCUCCGAc -3'
miRNA:   3'- -CCG-CGCGGa-GGUGGaGCc-GGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 196459 0.68 0.616234
Target:  5'- cGCGCGaaCCUCCGCuggcaCUCGGCCcguUCCGc- -3'
miRNA:   3'- cCGCGC--GGAGGUG-----GAGCCGG---AGGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.