miRNA display CGI


Results 81 - 100 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 95192 0.68 0.616234
Target:  5'- cGGCGCGgaaCUCCACgCcCGGCa-CCGGGu -3'
miRNA:   3'- -CCGCGCg--GAGGUG-GaGCCGgaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 196459 0.68 0.616234
Target:  5'- cGCGCGaaCCUCCGCuggcaCUCGGCCcguUCCGc- -3'
miRNA:   3'- cCGCGC--GGAGGUG-----GAGCCGG---AGGCuc -5'
14620 5' -63.3 NC_003521.1 + 148851 0.68 0.619992
Target:  5'- uGCGUGCCgugcaccgcgCCagcuacgccagccugGCCUCGGCCguggccgacgCCGAGg -3'
miRNA:   3'- cCGCGCGGa---------GG---------------UGGAGCCGGa---------GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 36084 0.68 0.624692
Target:  5'- cGGCgGCGCCUCCAucaccacCCUCGccacCCUCCc-- -3'
miRNA:   3'- -CCG-CGCGGAGGU-------GGAGCc---GGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 128194 0.68 0.625632
Target:  5'- -aCGCGCUUCCACCUgGGCUggguguaGAGc -3'
miRNA:   3'- ccGCGCGGAGGUGGAgCCGGagg----CUC- -5'
14620 5' -63.3 NC_003521.1 + 152836 0.68 0.625632
Target:  5'- cGCGCGCCcCCAgauucaccgaguCCUCGcGCCg-CGAGg -3'
miRNA:   3'- cCGCGCGGaGGU------------GGAGC-CGGagGCUC- -5'
14620 5' -63.3 NC_003521.1 + 29357 0.68 0.629393
Target:  5'- uGCGC-CCUgCGCCUCauGGCCUgccccgaccgcgaggCCGAGg -3'
miRNA:   3'- cCGCGcGGAgGUGGAG--CCGGA---------------GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 111553 0.67 0.634094
Target:  5'- --gGCGCCUCUACCUCgaggugcGGCUgagCCGGc -3'
miRNA:   3'- ccgCGCGGAGGUGGAG-------CCGGa--GGCUc -5'
14620 5' -63.3 NC_003521.1 + 122940 0.67 0.635034
Target:  5'- -cCGCGCC-CgGCCgugcUCGGCCUcgCCGGGg -3'
miRNA:   3'- ccGCGCGGaGgUGG----AGCCGGA--GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 206306 0.67 0.635034
Target:  5'- cGCGCGUCUCgGCCcgCGGCCgcuaCCu-- -3'
miRNA:   3'- cCGCGCGGAGgUGGa-GCCGGa---GGcuc -5'
14620 5' -63.3 NC_003521.1 + 66570 0.67 0.635034
Target:  5'- uGGCGCGCCagCGCaaCGuGCgUCUGAGc -3'
miRNA:   3'- -CCGCGCGGagGUGgaGC-CGgAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 17250 0.67 0.644434
Target:  5'- aGGCGCGCCguaUUCACCUgaauaCGGauuuaUCUCCGGa -3'
miRNA:   3'- -CCGCGCGG---AGGUGGA-----GCC-----GGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 104108 0.67 0.644434
Target:  5'- cGGCGCGCUgCCAguCCUCGGCggcgUCCu-- -3'
miRNA:   3'- -CCGCGCGGaGGU--GGAGCCGg---AGGcuc -5'
14620 5' -63.3 NC_003521.1 + 116928 0.67 0.644434
Target:  5'- cGCGCGCCgacagCaCGCgaCaGCUUCCGAGg -3'
miRNA:   3'- cCGCGCGGa----G-GUGgaGcCGGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 123911 0.67 0.644434
Target:  5'- cGGCGCGCggcgcuguuCUCCACCaguugcagCGGCg-CCGAu -3'
miRNA:   3'- -CCGCGCG---------GAGGUGGa-------GCCGgaGGCUc -5'
14620 5' -63.3 NC_003521.1 + 16889 0.67 0.644434
Target:  5'- cGGC-CGCCUCgACCcccUCGGCCgcgCCu-- -3'
miRNA:   3'- -CCGcGCGGAGgUGG---AGCCGGa--GGcuc -5'
14620 5' -63.3 NC_003521.1 + 117251 0.67 0.652887
Target:  5'- cGGCGcCGCCgccaucccgCCACCgccgucgUCGGCCguggugCCGGc -3'
miRNA:   3'- -CCGC-GCGGa--------GGUGG-------AGCCGGa-----GGCUc -5'
14620 5' -63.3 NC_003521.1 + 179532 0.67 0.653826
Target:  5'- gGGCGCGCaaagucgUCC-CgCUCGGCUUCCu-- -3'
miRNA:   3'- -CCGCGCGg------AGGuG-GAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 46399 0.67 0.653826
Target:  5'- uGGCGuCGCagaUgCGucCCUCGGCCUCCu-- -3'
miRNA:   3'- -CCGC-GCGg--AgGU--GGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 60559 0.67 0.653826
Target:  5'- uGCGCGCCuacuUCCcCCUgCGGUacaCCGAGg -3'
miRNA:   3'- cCGCGCGG----AGGuGGA-GCCGga-GGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.