miRNA display CGI


Results 101 - 120 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 60559 0.67 0.653826
Target:  5'- uGCGCGCCuacuUCCcCCUgCGGUacaCCGAGg -3'
miRNA:   3'- cCGCGCGG----AGGuGGA-GCCGga-GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 18094 0.67 0.657579
Target:  5'- cGGCGCgcgagaugagcgGCCUCaACCUggugauccgcacgccCGGCCgcaCCGAGg -3'
miRNA:   3'- -CCGCG------------CGGAGgUGGA---------------GCCGGa--GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 139061 0.67 0.663203
Target:  5'- cGGCGcCGCagaUCACCcUGGCCUCgGGGc -3'
miRNA:   3'- -CCGC-GCGga-GGUGGaGCCGGAGgCUC- -5'
14620 5' -63.3 NC_003521.1 + 56050 0.67 0.663203
Target:  5'- aGGCGCGCguugCC-CCagaucaCGGCCUCCGu- -3'
miRNA:   3'- -CCGCGCGga--GGuGGa-----GCCGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 7405 0.67 0.672559
Target:  5'- aGGC-CGUCggagCCACCggGGCCaggagCCGAGa -3'
miRNA:   3'- -CCGcGCGGa---GGUGGagCCGGa----GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 24464 0.67 0.672559
Target:  5'- cGCGCggaccacggGCCUCaCACCcucggUGGCCaCCGAGa -3'
miRNA:   3'- cCGCG---------CGGAG-GUGGa----GCCGGaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 207287 0.67 0.672559
Target:  5'- cGGC-CGCCUUUACUucaUCGGCCUCa--- -3'
miRNA:   3'- -CCGcGCGGAGGUGG---AGCCGGAGgcuc -5'
14620 5' -63.3 NC_003521.1 + 183722 0.67 0.672559
Target:  5'- cGGCuGCugggGCCUCUACC-CGGCCaUCCu-- -3'
miRNA:   3'- -CCG-CG----CGGAGGUGGaGCCGG-AGGcuc -5'
14620 5' -63.3 NC_003521.1 + 121381 0.67 0.679092
Target:  5'- -uCGCGCCUCCAUCgcgaguacaUCGugcaggugcagaacGCCUUCGAGa -3'
miRNA:   3'- ccGCGCGGAGGUGG---------AGC--------------CGGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 18187 0.67 0.680955
Target:  5'- uGCGCGCCUgCCgGCCcuucgaucacaugUCGGCCgCgGAGu -3'
miRNA:   3'- cCGCGCGGA-GG-UGG-------------AGCCGGaGgCUC- -5'
14620 5' -63.3 NC_003521.1 + 30082 0.67 0.681887
Target:  5'- -aUGUGCC-CCGCCaCGGCCuacgauUCCGGGa -3'
miRNA:   3'- ccGCGCGGaGGUGGaGCCGG------AGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 120274 0.67 0.681887
Target:  5'- gGGCGCuCCcCCgggACCgcCGGCCgCCGAGg -3'
miRNA:   3'- -CCGCGcGGaGG---UGGa-GCCGGaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 145986 0.67 0.681887
Target:  5'- uGGCGCGCUUcCCGCUgcCGGCUUuuGu- -3'
miRNA:   3'- -CCGCGCGGA-GGUGGa-GCCGGAggCuc -5'
14620 5' -63.3 NC_003521.1 + 144026 0.67 0.681887
Target:  5'- cGCGCGCUUCC-CCgucucCGGUCUgCGGc -3'
miRNA:   3'- cCGCGCGGAGGuGGa----GCCGGAgGCUc -5'
14620 5' -63.3 NC_003521.1 + 105053 0.67 0.681887
Target:  5'- aGCGCcacuGCCgccaCCGCCuUCGGUC-CCGGGa -3'
miRNA:   3'- cCGCG----CGGa---GGUGG-AGCCGGaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 72144 0.67 0.681887
Target:  5'- aGGaCG-GCCUgCCACCagGGaCCUCCGGc -3'
miRNA:   3'- -CC-GCgCGGA-GGUGGagCC-GGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 181863 0.67 0.681887
Target:  5'- cGGCGCGCUUCUucgcGCCagagGGCCUgguggaguUCGAGg -3'
miRNA:   3'- -CCGCGCGGAGG----UGGag--CCGGA--------GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 86696 0.66 0.691181
Target:  5'- uGGCGCuGCCgCCcuuGCC-CGGCCg-CGAGa -3'
miRNA:   3'- -CCGCG-CGGaGG---UGGaGCCGGagGCUC- -5'
14620 5' -63.3 NC_003521.1 + 153921 0.66 0.691181
Target:  5'- cGUGCaGCUUCCAcuCCUCGGCCacccgCCGc- -3'
miRNA:   3'- cCGCG-CGGAGGU--GGAGCCGGa----GGCuc -5'
14620 5' -63.3 NC_003521.1 + 142335 0.66 0.691181
Target:  5'- gGGUGCGCgaggCCGCCgccaCGGCCgCCGcGg -3'
miRNA:   3'- -CCGCGCGga--GGUGGa---GCCGGaGGCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.