miRNA display CGI


Results 81 - 100 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 66570 0.67 0.635034
Target:  5'- uGGCGCGCCagCGCaaCGuGCgUCUGAGc -3'
miRNA:   3'- -CCGCGCGGagGUGgaGC-CGgAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 206306 0.67 0.635034
Target:  5'- cGCGCGUCUCgGCCcgCGGCCgcuaCCu-- -3'
miRNA:   3'- cCGCGCGGAGgUGGa-GCCGGa---GGcuc -5'
14620 5' -63.3 NC_003521.1 + 122940 0.67 0.635034
Target:  5'- -cCGCGCC-CgGCCgugcUCGGCCUcgCCGGGg -3'
miRNA:   3'- ccGCGCGGaGgUGG----AGCCGGA--GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 111553 0.67 0.634094
Target:  5'- --gGCGCCUCUACCUCgaggugcGGCUgagCCGGc -3'
miRNA:   3'- ccgCGCGGAGGUGGAG-------CCGGa--GGCUc -5'
14620 5' -63.3 NC_003521.1 + 29357 0.68 0.629393
Target:  5'- uGCGC-CCUgCGCCUCauGGCCUgccccgaccgcgaggCCGAGg -3'
miRNA:   3'- cCGCGcGGAgGUGGAG--CCGGA---------------GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 152836 0.68 0.625632
Target:  5'- cGCGCGCCcCCAgauucaccgaguCCUCGcGCCg-CGAGg -3'
miRNA:   3'- cCGCGCGGaGGU------------GGAGC-CGGagGCUC- -5'
14620 5' -63.3 NC_003521.1 + 128194 0.68 0.625632
Target:  5'- -aCGCGCUUCCACCUgGGCUggguguaGAGc -3'
miRNA:   3'- ccGCGCGGAGGUGGAgCCGGagg----CUC- -5'
14620 5' -63.3 NC_003521.1 + 36084 0.68 0.624692
Target:  5'- cGGCgGCGCCUCCAucaccacCCUCGccacCCUCCc-- -3'
miRNA:   3'- -CCG-CGCGGAGGU-------GGAGCc---GGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 148851 0.68 0.619992
Target:  5'- uGCGUGCCgugcaccgcgCCagcuacgccagccugGCCUCGGCCguggccgacgCCGAGg -3'
miRNA:   3'- cCGCGCGGa---------GG---------------UGGAGCCGGa---------GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 95192 0.68 0.616234
Target:  5'- cGGCGCGgaaCUCCACgCcCGGCa-CCGGGu -3'
miRNA:   3'- -CCGCGCg--GAGGUG-GaGCCGgaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 83772 0.68 0.616234
Target:  5'- uGGCgGCGCCccCCGCCgCGcuCCUCCGAc -3'
miRNA:   3'- -CCG-CGCGGa-GGUGGaGCc-GGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 118954 0.68 0.616234
Target:  5'- gGGCcaGCGCCcgagacagUCCcuCCUCGGUgUCCGAc -3'
miRNA:   3'- -CCG--CGCGG--------AGGu-GGAGCCGgAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 234450 0.68 0.616234
Target:  5'- cGGCGCcCCUCCGcgaccCCgacCGGCCccUCUGGGa -3'
miRNA:   3'- -CCGCGcGGAGGU-----GGa--GCCGG--AGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 7099 0.68 0.616234
Target:  5'- cGGCgGCGuCCUCCuuCUCcaGGCCgCUGAGg -3'
miRNA:   3'- -CCG-CGC-GGAGGugGAG--CCGGaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 142590 0.68 0.616234
Target:  5'- uGGC-CGCCcCCGCCUCcccGCCUCCc-- -3'
miRNA:   3'- -CCGcGCGGaGGUGGAGc--CGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 196459 0.68 0.616234
Target:  5'- cGCGCGaaCCUCCGCuggcaCUCGGCCcguUCCGc- -3'
miRNA:   3'- cCGCGC--GGAGGUG-----GAGCCGG---AGGCuc -5'
14620 5' -63.3 NC_003521.1 + 55018 0.68 0.616234
Target:  5'- aGGCGCaGCg-CCAgCgUCGGCggCUCCGAGa -3'
miRNA:   3'- -CCGCG-CGgaGGU-GgAGCCG--GAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 80992 0.68 0.615295
Target:  5'- -uCGCGCCUCCgcgcagcGCCUcaCGGCCggUCCGuGa -3'
miRNA:   3'- ccGCGCGGAGG-------UGGA--GCCGG--AGGCuC- -5'
14620 5' -63.3 NC_003521.1 + 234193 0.68 0.606847
Target:  5'- aGCGgGCCaagcgUUCGCgCgCGGCCUCCGAa -3'
miRNA:   3'- cCGCgCGG-----AGGUG-GaGCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 117109 0.68 0.606847
Target:  5'- aGGC-CGCCUCCGCCgcucagccgCcGCCUCCu-- -3'
miRNA:   3'- -CCGcGCGGAGGUGGa--------GcCGGAGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.